Download for expression and functional state profiles

Database ID Dataset Name Cancer Type No. Cells Source Accession Expression Profile State Score
EXP0001Chen W. Genome Biol. 2018 (Rh41)Alveolar rhabdomyosarcoma6875Cell Line: Rh41GSE113660PCG, lncRNA
EXP0002Yukie Kashima. Scientific Report. 2018 (H1650)Bronchoalveolar carcinoma 96Cell Line: H1650DRP003981PCG, lncRNA
EXP0003Booth CAG.2018.Cancer Cell (ALL Cell Lines)Acute lymphoblastic leukemia 24Cell Line: LOUCY/JURKATGSE100694PCG, lncRNA
EXP0004Klein AM. Cell. 2015 (K562)Chronic myelogenous leukemia1192Cell Line: K562GSE65525PCG
EXP0005Attar M. Sci Rep. 2018 (K562)Chronic myelogenous leukemia 267Cell Line: K562GSE98734PCG, lncRNA
EXP0006Giustacchini A. Nat Med. 2017 (K562)Chronic myelogenous leukemia 91Cell Line: K562GSE76312PCG, lncRNA
EXP0007Kind J. Cell. 2015 (KBM7)Chronic myelogenous leukemia 81Cell Line: KBM7GSE68596PCG
EXP0008Guillaumet-Adkins A. Genome Biol. 2017 (K562)Chronic myelogenous leukemia 81Cell Line: K562GSE85534PCG
EXP0009Li H. Nat Genet. 2017 (K562)Chronic myelogenous leukemia 73Cell Line: K562GSE81861PCG, lncRNA
EXP0010Aarts M. Genes Dev. 2017 (K562)Chronic myelogenous leukemia 50Cell Line: K562GSE94979PCG, lncRNA
EXP0011Wu AR. Nat Methods. 2014 (HCT-116)Colorectal cancer 99Cell Line: HCT-116GSE51254PCG, lncRNA
EXP0012Li H. Nat Genet. 2017 (HCT-116)Colorectal cancer 51Cell Line: HCT-116GSE81861PCG, lncRNA
EXP0013Arindam Banerjee. Oncotarget. 2018 (MDA-MB-231 )Breast cancer 617Cell Line: MDA-MB-231 GSE106202PCG
EXP0014Hafner M.Nat Methods.2016 (BRCA Cell Lines)Breast cancer 87Cell Line: BT20/MCF-10A /SKBR3GSE80297PCG
EXP0015Yeakley JM. PLoS One. 2017 (MCF-7)Breast cancer 45Cell Line: MCF-7GSE91395PCG, lncRNA
EXP0016Yeakley JM. PLoS One. 2017 (MDA-MB-231)Breast cancer 33Cell Line: MDA-MB-231GSE91395PCG, lncRNA
EXP0017Aaron TL Lun. Nucleic Acids Res. 2018 (Hela)Cervix cancer 126Cell Line: HelaERP020478PCG, lncRNA
EXP0018Hennig BP. G3 (Bethesda). 2018 (Hela)Cervix cancer 42Cell Line: HelaGSE101519PCG
EXP0019Patel AP. Science. 2014 (GBM Cell Lines)Glioblastoma 177Cell Line: GSC/DGCGSE57872PCG, lncRNA
EXP0020Bose S.Genome Biol.2015 (U-87)Glioblastoma 39Cell Line: U-87GSE66357PCG
EXP0021Filbin MG.Science. 2018 (Cell Culture)Glioma 696Cell Line: Cell cultureGSE102130PCG
EXP0022Boeva V. Nat Genet 2017 (Cell Line)Neuroblastoma 36Cell Line: Neuroblastoma cell lineGSE90683PCG, lncRNA
EXP0023Ling Yang. 2018 (KYSE-180 )Esophageal squamous cell carcinoma 314Cell Line: KYSE-180 GSE81812PCG, lncRNA
EXP0024Zheng H. Hepatology. 2018 (HuH-7)Hepatocellular carcinoma 55Cell Line: HuH-7GSE103866PCG, lncRNA
EXP0025Zheng H. Hepatology. 2018 (HuH-1)Hepatocellular carcinoma 43Cell Line: HuH-1GSE103866PCG, lncRNA
EXP0026Suzuki A. Genome Biol. 2015 (LC-2/ad)Lung adenocarcinoma 245Cell Line: LC-2/adDRP001358PCG, lncRNA
EXP0027Tsukasa Kouno.biorxiv. 2018 (A549)Lung adenocarcinoma 218Cell Line: A549DRP003337PCG, lncRNA
EXP0028Yukie Kashima. Scientific Report. 2018 (II18)Lung adenocarcinoma 96Cell Line: II18DRP003981PCG, lncRNA
EXP0029Li H. Nat Genet. 2017 (A594)Lung adenocarcinoma 74Cell Line: A549GSE81861PCG, lncRNA
EXP0030Kim KT. Genome Biol. 2015 (H358)Lung adenocarcinoma 50Cell Line: H358GSE69405PCG, lncRNA
EXP0031Suzuki A. Genome Biol. 2015 (PC-9)Lung adenocarcinoma 46Cell Line: PC-9DRP001358PCG, lncRNA
EXP0032Suzuki A. Genome Biol. 2015 (VMRC-LCD)Lung adenocarcinoma 46Cell Line: VMRC-LCDDRP001358PCG, lncRNA
EXP0033Yukie Kashima. Scientific Report. 2018 (PC-9)Non-small cell lung cancer 164Cell Line: PC-9DRP003981PCG, lncRNA
EXP0034Yukie Kashima. Scientific Report. 2018 (H1975)Non-small cell lung cancer 96Cell Line: H1975DRP003981PCG, lncRNA
EXP0035Yukie Kashima. Scientific Report. 2018 (H2228)Non-small cell lung cancer 96Cell Line: H2228DRP003981PCG, lncRNA
EXP0036Li H. Nat Genet. 2017 (H1437)Non-small cell lung cancer 47Cell Line: H1437GSE81861PCG, lncRNA
EXP0037Shah F. Mol Oncol. 2017 (Cell Line)Pancreatic ductal adenocarcinoma 96Cell Line: Pancreatic ductal adenocarcinoma cell linesGSE99305PCG, lncRNA
EXP0038Horning AM. Cancer Res. 2018 (LNCaP)Prostate cancer 144Cell Line: LNCaPGSE99795PCG, lncRNA
EXP0039Miyamoto DT. Science. 2015 (Cell Lines)Prostate cancer 30Cell Line: DU145/LNCaP/PC3/VCaP GSE67980PCG
EXP0040Torre EA. Cell Syst. 2018 (WM989)Melanoma 575Cell Line: WM989GSE99330PCG, lncRNA
EXP0041Shaffer SM. Nature. 2017 (WM983B)Melanoma 86Cell Line: WM983BGSE97681PCG, lncRNA
EXP0042Shaffer SM. Nature. 2017 (WM989)Melanoma 36Cell Line: WM989GSE97681PCG, lncRNA
EXP0043Karlsson J. J Mol Biol. 2017 (MLS 1765-92)Myxoid liposarcoma 96Cell Line: MLS 1765-92E-MTAB-6142PCG, lncRNA
EXP0044Hou Y. Cell Res. 2016 (Liver)Hepatocellular carcinoma 26Tissue: LiverGSE65364PCG, lncRNA
EXP0045Lynn Quek.2016 (Bone marrow)Acute myeloid leukemia 24Tissue: Bone marrowE-MTAB-2672PCG, lncRNA
EXP0046Ebinger S. Cancer Cell. 2016 (PDX)Acute lymphoblastic leukemia 172PDXGSE83142PCG
EXP0047Fan J. Genome Res. 2018 (Bone marrow_10X)Acute myeloid leukemia1139Tissue: Bone marrowGSE110499PCG
EXP0048Fan J. Genome Res. 2018 (Bone marrow_Smart)Acute myeloid leukemia 165Tissue: Bone marrowGSE110499PCG
EXP0049Li S. Nat Med. 2016 (Bone marrow)Acute myeloid leukemia 96Tissue: Bone marrowGSE83533PCG
EXP0050Giustacchini A. Nat Med. 2017 (Bone marrow)Chronic myelogenous leukemia1877Tissue: Bone marrowGSE76312PCG, lncRNA
EXP0051Li H. Nat Genet. 2017 (Colon)Colorectal cancer 290Tissue: ColonGSE81861PCG, lncRNA
EXP0052Braune EB. Stem Cell Reports. 2016 (PDX)Breast cancer 369PDXGSE77308PCG, lncRNA
EXP0053Chung W. Nat Commun. 2017 (Breast)Breast cancer 317Tissue: BreastGSE75688PCG, lncRNA
EXP0054Jordan NV. Nature. 2016 (CTC)Breast cancer 70CTCGSE75367PCG, lncRNA
EXP0055Aceto N. Mol Cancer Res. 2018 (CTC)Breast cancer 32CTCGSE86978PCG
EXP0056Venteicher AS. Science. 2017 (Brain)Astrocytoma5097Tissue: BrainGSE89567PCG
EXP0057Darmanis S. Cell Rep. 2017 (Brain)Glioblastoma 991Tissue: BrainGSE84465PCG, lncRNA
EXP0058Patel AP. Science. 2014 (Brain)Glioblastoma 623Tissue: BrainGSE57872PCG, lncRNA
EXP0059Filbin MG.Science. 2018 (Brain)Glioma2259Tissue: BrainGSE102130PCG
EXP0060Filbin MG.Science. 2018 (PDX)Glioma 167PDXGSE102130PCG
EXP0061Yuan J. bioRxiv. 2018 (Brain)High-grade glioma2772Tissue: BrainGSE103224PCG, lncRNA
EXP0062Tirosh I. Nature. 2016 (Brain)Oligodendroglioma4043Tissue: BrainGSE70630PCG
EXP0063Puram SV. Cell. 2017 (Oral Cavity)Head and neck cancer2105Tissue: Oral Cavity and lymph nodeGSE103322PCG
EXP0064Kim KT. Genome Biol. 2016 (PDX)Renal cell carcinoma 83PDXGSE73121PCG, lncRNA
EXP0065Kim KT. Genome Biol. 2016 (Kidney)Renal cell carcinoma 35Tissue: KidneyGSE73121PCG, lncRNA
EXP0066Kim KT. Genome Biol. 2015 (PDX)Lung adenocarcinoma 126PDXGSE69405PCG, lncRNA
EXP0067Guillaumet-Adkins A. Genome Biol. 2017 (PDX_LUAD)Lung adenocarcinoma 42PDXGSE85534PCG
EXP0068Lambrechts D. Nat Med. 2018 (Lung)Non-small cell lung cancer3524Tissue: LungE-MTAB-6149PCG, lncRNA
EXP0069Guillaumet-Adkins A. Genome Biol. 2017 (PDX_OV)Ovarian carcinoma 244PDXGSE85534PCG
EXP0070Miyamoto DT. Science. 2015 (CTC)Prostate cancer 117CTCGSE67980PCG
EXP0071Tirosh I. Science. 2016 (Skin)Melanoma1257Tissue: SkinGSE72056PCG
EXP0072Gerber T. Oncotarget. 2017 (Skin)Melanoma 307Tissue: SkinGSE81383PCG, lncRNA
Download for signature profiles
Signature Description No. genes Source Download
AngiogenesisAngiogenesis ensures that cancer cells receive continuous supplies of oxygen and other nutrients.7315614775,GO,MsigDB
ApoptosisThe inactivation of apoptosis in cancer cells lead to the persistence of such grossly abnormal cells in the tissues.6617621274,GO,MsigDB
Cell CycleCell cycle,a critical process to ensure correct cell division,lies at the heart of cancer.13728102192,27124452,29472726,27806376,cyclebase
DifferentiationThe degree of cell differentiation can be used to measure the progress of cancer,and dedifferentiated cells can lead to the formation of cancer.20126771357,GO,MsigDB
DNA damageDNA damage is an alteration in the chemical structure of DNA,and un-repaired DNA damages accumulate in replicating cells possibly contribute to progression to cancer110GO,MsigDB
DNA repairDNA repair plays a fundamental role in the maintenance of genomic integrity,it's deficits may lead to carcinogenesis.119GO,MsigDB
EMTEMT has been indicated to be involved in the initiation of metastasis in cancer progression and in acquiring drug resistance.9026771357,20713713,GO,MsigDB
HypoxiaTumor-hypoxia contributes to cell mobility,metastasis and therapy resistance.8326771357,15374877,MsigDB
InflammationChronic inflammation can cause about 15% to 25% of human cancers.112GO,MsigDB
InvasionInvasion is a critical carcinogenic event in which cancer cells escape from their primary sites and spread to blood or lymphatic vessels.97MsigDB
MetastasisMetastasis promotes the malignant transformation of cancer and causes most cancer deaths.16626771357,HCMDB
ProliferationProliferation,as one of the cancer hallmarks,is responsible for tumor progression.8826771357,GO,MsigDB
QuiescenceQuiescent cancer cells are resistant to chemotherapy.6617717066,MsigDB
StemnessCancer cells with high stemness fuel the growth of cancer.16627806376,26771357,StemMapper