'utf8' codec can't decode byte 0xdf in position 3228: invalid continuation byte
Request Method: | GET |
---|---|
Request URL: | http://www.receptome.org/SearchDB/getGenePage.asp?Param=P32927&ProtId=1&ProtType=Receptor |
Django Version: | 1.8.4 |
Exception Type: | UnicodeDecodeError |
Exception Value: | 'utf8' codec can't decode byte 0xdf in position 3228: invalid continuation byte |
Exception Location: | /usr/lib64/python2.7/codecs.py in decode, line 296 |
Python Executable: | /usr/bin/python |
Python Version: | 2.7.5 |
Python Path: | ['/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg', '/home/rami/webapps/hpmr', '/home/rami/webapps/hpmr/hpmr', '/home/rami/webapps/hpmr/lib/python2.7', '/usr/lib64/python27.zip', '/usr/lib64/python2.7', '/usr/lib64/python2.7/plat-linux2', '/usr/lib64/python2.7/lib-tk', '/usr/lib64/python2.7/lib-old', '/usr/lib64/python2.7/lib-dynload', '/usr/lib64/python2.7/site-packages', '/usr/lib64/python2.7/site-packages/PIL', '/usr/lib64/python2.7/site-packages/geos', '/usr/lib/python2.7/site-packages'] |
Server time: | Thu, 28 Mar 2019 10:05:55 -0700 |
The string that could not be encoded/decoded was: mmon � subu
In template /home/rami/webapps/hpmr/hpmr/hpmr/templates/gene_page.html
, error at line 109
99 | <div class="paragraph"><span class="title">Summary: <span style="font-size:85%">(from NCBI-Entrez)</span></span><br/> |
---|---|
100 | <span id="OpenSummary">{{ .ENTREZ_Summary|slice:":300" }} |
101 | {% if gene.ENTREZ_Summary %} |
102 | <a href="#" onClick="document.getElementById('Summary').style.display='block';document.getElementById('OpenSummary').style.display='none';">..[read more]</a></span> |
103 | <span id="Summary" style="display:none">{{ gene.ENTREZ_Summary }}</span> |
104 | {% endif %} |
105 | </div> |
106 | {% endif %} |
107 | |
108 | <div class="paragraph"> |
109 | {% include ints_template %} |
110 | </div> |
111 | |
112 | |
113 | <div class="paragraph"> |
114 | {% include fam_template %} |
115 | </div> |
116 | |
117 | |
118 | <div class="paragraph"><a name="GenExpParag"></a> <span class="supertitle"> |
119 | <!--<a href="#GenExpParag" onClick="void dispFrames('GenExp')"> --> |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/core/handlers/base.py
in get_response
response = middleware_method(request, callback, callback_args, callback_kwargs)
if response:
break
if response is None:
wrapped_callback = self.make_view_atomic(callback)
try:
response = wrapped_callback(request, *callback_args, **callback_kwargs)...
except Exception as e:
# If the view raised an exception, run it through exception
# middleware, and if the exception middleware returns a
# response, use that. Otherwise, reraise the exception.
for middleware_method in self._exception_middleware:
response = middleware_method(request, e)
Variable | Value |
---|---|
e | UnicodeDecodeError('utf8', '\r\r<img id="GeneIntsNode" class="paragNode" src="http://www.appliedbioinfo.com/APBIO_MEDIA/images/hpmr/Icons/open.png" --onClick="void dispFrames(\'GeneInts\')">\r<img class="paragIcon" src="http://www.appliedbioinfo.com/APBIO_MEDIA/images/hpmr/Icons/ReceptorInts.png" border="0">\r<span class="supertitle">\rReceptor CSF2RB interacts with:</span>\r <div id="GeneInts" style="display:block"><div><TABLE width=\'100%\' class=\'ints_table\' border=0 cellpadding=\'2\'><TR BgColor=\'#FFFFFF\'><td></td></TR><TR BgColor=\'#EFEFEF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=P15509&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> CSF2RA - GRANULOCYTE-MACROPHAGE COLONY-STIMULATING ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=1437&ProtId=1&ProtType=Ligand\' target=\'_self\' title=\'Click to Open Details Page\'>Ligand</a> CSF2 - GRANULOCYTE-MACROPHAGE COLONY-STIMULATING F ...</span><span style=\'margin-left: 10px\' class=\'IntRow\'><a id=\'OpenComm_973\' href=\'#\' onClick=\'document.getElementById("Comm_973").style.display="block";document.getElementById("OpenComm_973").style.display="none";\'>[read more..]</a><div id=\'Comm_973\' style=\'display: none; color: #006600;text-align: left; margin:bottom:3px\'> <a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2828352\'>DiPersio J,et al. (J Biol Chem, 1988)</a> firstly reported the CSF receptor GM-CSFR.Heterodimeric cytokine receptors generally consist of a major cytokine-binding subunit and a signaling subunit. The latter can transduce signals by more than 1 cytokine, as exemplified by the granulocyte-macrophage colony-stimulating factor (GM-CSF), interleukin-2 (IL-2), and IL-6 receptor systems <a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10753826\'>(Rossjohn et al. 2000)</a>. </div></span></td></td></TR><TR BgColor=\'#FFFFFF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=Q01344&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> IL5RA - INTERLEUKIN-5 RECEPTOR ALPHA CHAIN [PRECUR ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=3567&ProtId=1&ProtType=Ligand\' target=\'_self\' title=\'Click to Open Details Page\'>Ligand</a> IL5 - INTERLEUKIN 5 (COLONY-STIMULATING FACTOR, EO ...</span><span style=\'margin-left: 10px\' class=\'IntRow\'><a id=\'OpenComm_1506\' href=\'#\' onClick=\'document.getElementById("Comm_1506").style.display="block";document.getElementById("OpenComm_1506").style.display="none";\'>[read more..]</a><div id=\'Comm_1506\' style=\'display: none; color: #006600;text-align: left; margin:bottom:3px\'> The receptors for human IL-5, IL-3, and GM-CSF are members of the hematopoietin receptor superfamily. The high-affinity receptor complexes for each of these cytokines are composed of a ligand-specific alpha chain and a dimer of the common \xdf subunit (\xdfc) that is shared by all three cytokines<a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11748263\'>(Martinez-Moczygemba & Huston 2001)</a> </div></span></td></td></TR><TR BgColor=\'#EFEFEF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=106823&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> IL3RA - A40266 INTERLEUKIN-3 RECEPTOR ALPHA CHAIN ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=3562&ProtId=1&ProtType=Ligand\' target=\'_self\' ... <trimmed 5073 bytes string> |
callback_args | () |
resolver_match | ResolverMatch(func=hpmr.hpmr_views.get_gene_by_id, args=(), kwargs={}, url_name=None, app_name=None, namespaces=[]) |
middleware_method | <bound method CsrfViewMiddleware.process_view of <django.middleware.csrf.CsrfViewMiddleware object at 0x7f288a47c1d0>> |
self | <django.core.handlers.wsgi.WSGIHandler object at 0x7f28900cbb10> |
request | "<WSGIRequest\npath:/SearchDB/getGenePage.asp,\nGET:<QueryDict: {u'ProtId': [u'1'], u'Param': [u'P32927'], u'ProtType': [u'Receptor']}>,\nPOST:<QueryDict: {}>,\nCOOKIES:{},\nMETA:{'CONTEXT_DOCUMENT_ROOT': '/usr/local/apache2/htdocs',\n 'CONTEXT_PREFIX': '',\n u'CSRF_COOKIE': u'wxI0NI6oNronfigcTV3nCciCBB99i0XO',\n 'DOCUMENT_ROOT': '/usr/local/apache2/htdocs',\n 'GATEWAY_INTERFACE': 'CGI/1.1',\n 'HTTP_ACCEPT': '*/*',\n 'HTTP_CONNECTION': 'close',\n 'HTTP_FORWARDED_REQUEST_URI': '/SearchDB/getGenePage.asp?Param=P32927&ProtId=1&ProtType=Receptor',\n 'HTTP_HOST': 'www.receptome.org',\n 'HTTP_HTTPS': 'off',\n 'HTTP_USER_AGENT': 'PycURL/7.43.0.2 libcurl/7.64.0 OpenSSL/1.1.1a zlib/1.2.11 libidn2/2.1.1 libpsl/0.20.2 (+libidn2/2.1.1) libssh2/1.8.0 nghttp2/1.36.0',\n 'HTTP_X_FORWARDED_FOR': '194.94.44.220',\n 'HTTP_X_FORWARDED_HOST': 'www.receptome.org',\n 'HTTP_X_FORWARDED_PROTO': 'http',\n 'HTTP_X_FORWARDED_SERVER': 'www.receptome.org',\n 'HTTP_X_FORWARDED_SSL': 'off',\n 'LD_LIBRARY_PATH': '/home/rami/webapps/hpmr/apache2/lib:/home/rami/webapps/hpmr/lib',\n 'PATH_INFO': u'/SearchDB/getGenePage.asp',\n 'PATH_TRANSLATED': '/home/rami/webapps/hpmr/hpmr/hpmr/wsgi.py/SearchDB/getGenePage.asp',\n 'QUERY_STRING': 'Param=P32927&ProtId=1&ProtType=Receptor',\n 'REMOTE_ADDR': '127.0.0.1',\n 'REMOTE_PORT': '43956',\n 'REQUEST_METHOD': 'GET',\n 'REQUEST_SCHEME': 'http',\n 'REQUEST_URI': '/SearchDB/getGenePage.asp?Param=P32927&ProtId=1&ProtType=Receptor',\n 'SCRIPT_FILENAME': '/home/rami/webapps/hpmr/hpmr/hpmr/wsgi.py',\n 'SCRIPT_NAME': u'',\n 'SERVER_ADDR': '127.0.0.1',\n 'SERVER_ADMIN': '[no address given]',\n 'SERVER_NAME': 'www.receptome.org',\n 'SERVER_PORT': '80',\n 'SERVER_PROTOCOL': 'HTTP/1.0',\n 'SERVER_SIGNATURE': '',\n 'SERVER_SOFTWARE': 'Apache/2.4.25 (Unix) mod_wsgi/4.5.15 Python/2.7',\n 'apache.version': (2, 4, 25),\n 'mod_wsgi.application_group': 'web612.webfaction.com|',\n 'mod_wsgi.callable_object': 'application',\n 'mod_wsgi.daemon_connects': '1',\n 'mod_wsgi.daemon_restarts': '0',\n 'mod_wsgi.daemon_start': '1553792755223670',\n 'mod_wsgi.enable_sendfile': '0',\n 'mod_wsgi.handler_script': '',\n 'mod_wsgi.ignore_activity': '0',\n 'mod_wsgi.listener_host': '',\n 'mod_wsgi.listener_port': '14245',\n 'mod_wsgi.path_info': '/SearchDB/getGenePage.asp',\n 'mod_wsgi.process_group': 'hpmr',\n 'mod_wsgi.queue_start': '1553792755223517',\n 'mod_wsgi.request_handler': 'wsgi-script',\n 'mod_wsgi.request_id': 'H8k6kTIWagE',\n 'mod_wsgi.request_start': '1553792755222815',\n 'mod_wsgi.script_name': '',\n 'mod_wsgi.script_reloading': '1',\n 'mod_wsgi.script_start': '1553792755223711',\n 'mod_wsgi.thread_id': 1,\n 'mod_wsgi.thread_requests': 66952L,\n 'mod_wsgi.total_requests': 238376L,\n 'mod_wsgi.version': (4, 5, 15),\n 'wsgi.errors': <mod_wsgi.Log object at 0x7f288a4063a0>,\n 'wsgi.file_wrapper': <type 'mod_wsgi.FileWrapper'>,\n 'wsgi.input': <mod_wsgi.Input object at 0x7f288a362490>,\n 'wsgi.multiprocess': True,\n 'wsgi.multithread': True,\n 'wsgi.run_once': False,\n 'wsgi.url_scheme': 'http',\n 'wsgi.version': (1, 0)}>" |
callback | <function get_gene_by_id at 0x7f288a432c80> |
wrapped_callback | <function get_gene_by_id at 0x7f288a432c80> |
resolver | <RegexURLResolver 'hpmr.urls' (None:None) ^/> |
callback_kwargs | {} |
response | None |
urlconf | 'hpmr.urls' |
/home/rami/webapps/hpmr/hpmr/hpmr/hpmr_views.py
in get_gene_by_id
cursor.execute(SQL)
rows = dictfetchall(cursor)
GSymbol = '0' # default none
# >=1 because one gene can have more isoforms
if len(rows)>=1: GSymbol = rows[0]['GeneSymbol']
return get_gene_page(request, prot_type, GSymbol)...
def db_search_gene(term):
cursor = connection.cursor()
term = term.__str__().replace("'",'').replace('"','')
SQL = 'SELECT DISTINCT * FROM GENE_PROT_ALL WHERE '
Variable | Value |
---|---|
rows | [{'GeneSymbol': u'CSF2RB'}] |
prot_type | 'rec' |
request | "<WSGIRequest\npath:/SearchDB/getGenePage.asp,\nGET:<QueryDict: {u'ProtId': [u'1'], u'Param': [u'P32927'], u'ProtType': [u'Receptor']}>,\nPOST:<QueryDict: {}>,\nCOOKIES:{},\nMETA:{'CONTEXT_DOCUMENT_ROOT': '/usr/local/apache2/htdocs',\n 'CONTEXT_PREFIX': '',\n u'CSRF_COOKIE': u'wxI0NI6oNronfigcTV3nCciCBB99i0XO',\n 'DOCUMENT_ROOT': '/usr/local/apache2/htdocs',\n 'GATEWAY_INTERFACE': 'CGI/1.1',\n 'HTTP_ACCEPT': '*/*',\n 'HTTP_CONNECTION': 'close',\n 'HTTP_FORWARDED_REQUEST_URI': '/SearchDB/getGenePage.asp?Param=P32927&ProtId=1&ProtType=Receptor',\n 'HTTP_HOST': 'www.receptome.org',\n 'HTTP_HTTPS': 'off',\n 'HTTP_USER_AGENT': 'PycURL/7.43.0.2 libcurl/7.64.0 OpenSSL/1.1.1a zlib/1.2.11 libidn2/2.1.1 libpsl/0.20.2 (+libidn2/2.1.1) libssh2/1.8.0 nghttp2/1.36.0',\n 'HTTP_X_FORWARDED_FOR': '194.94.44.220',\n 'HTTP_X_FORWARDED_HOST': 'www.receptome.org',\n 'HTTP_X_FORWARDED_PROTO': 'http',\n 'HTTP_X_FORWARDED_SERVER': 'www.receptome.org',\n 'HTTP_X_FORWARDED_SSL': 'off',\n 'LD_LIBRARY_PATH': '/home/rami/webapps/hpmr/apache2/lib:/home/rami/webapps/hpmr/lib',\n 'PATH_INFO': u'/SearchDB/getGenePage.asp',\n 'PATH_TRANSLATED': '/home/rami/webapps/hpmr/hpmr/hpmr/wsgi.py/SearchDB/getGenePage.asp',\n 'QUERY_STRING': 'Param=P32927&ProtId=1&ProtType=Receptor',\n 'REMOTE_ADDR': '127.0.0.1',\n 'REMOTE_PORT': '43956',\n 'REQUEST_METHOD': 'GET',\n 'REQUEST_SCHEME': 'http',\n 'REQUEST_URI': '/SearchDB/getGenePage.asp?Param=P32927&ProtId=1&ProtType=Receptor',\n 'SCRIPT_FILENAME': '/home/rami/webapps/hpmr/hpmr/hpmr/wsgi.py',\n 'SCRIPT_NAME': u'',\n 'SERVER_ADDR': '127.0.0.1',\n 'SERVER_ADMIN': '[no address given]',\n 'SERVER_NAME': 'www.receptome.org',\n 'SERVER_PORT': '80',\n 'SERVER_PROTOCOL': 'HTTP/1.0',\n 'SERVER_SIGNATURE': '',\n 'SERVER_SOFTWARE': 'Apache/2.4.25 (Unix) mod_wsgi/4.5.15 Python/2.7',\n 'apache.version': (2, 4, 25),\n 'mod_wsgi.application_group': 'web612.webfaction.com|',\n 'mod_wsgi.callable_object': 'application',\n 'mod_wsgi.daemon_connects': '1',\n 'mod_wsgi.daemon_restarts': '0',\n 'mod_wsgi.daemon_start': '1553792755223670',\n 'mod_wsgi.enable_sendfile': '0',\n 'mod_wsgi.handler_script': '',\n 'mod_wsgi.ignore_activity': '0',\n 'mod_wsgi.listener_host': '',\n 'mod_wsgi.listener_port': '14245',\n 'mod_wsgi.path_info': '/SearchDB/getGenePage.asp',\n 'mod_wsgi.process_group': 'hpmr',\n 'mod_wsgi.queue_start': '1553792755223517',\n 'mod_wsgi.request_handler': 'wsgi-script',\n 'mod_wsgi.request_id': 'H8k6kTIWagE',\n 'mod_wsgi.request_start': '1553792755222815',\n 'mod_wsgi.script_name': '',\n 'mod_wsgi.script_reloading': '1',\n 'mod_wsgi.script_start': '1553792755223711',\n 'mod_wsgi.thread_id': 1,\n 'mod_wsgi.thread_requests': 66952L,\n 'mod_wsgi.total_requests': 238376L,\n 'mod_wsgi.version': (4, 5, 15),\n 'wsgi.errors': <mod_wsgi.Log object at 0x7f288a4063a0>,\n 'wsgi.file_wrapper': <type 'mod_wsgi.FileWrapper'>,\n 'wsgi.input': <mod_wsgi.Input object at 0x7f288a362490>,\n 'wsgi.multiprocess': True,\n 'wsgi.multithread': True,\n 'wsgi.run_once': False,\n 'wsgi.url_scheme': 'http',\n 'wsgi.version': (1, 0)}>" |
cursor | <django.db.backends.utils.CursorDebugWrapper object at 0x7f288a31ae10> |
SQL | u'SELECT DISTINCT GeneSymbol FROM GENE_PROT_ALL WHERE HPMR_GeneId = "P32927" OR ENTREZ_GeneId = "P32927"' |
GSymbol | u'CSF2RB' |
id | u'P32927' |
mycontext | {} |
/home/rami/webapps/hpmr/hpmr/hpmr/hpmr_views.py
in get_gene_page
#gene_page = 'GENE_PAGES/gene_'+prot_type+'_'+ gene_name+'.html'
mycontext['ints_template'] = 'GENE_PAGES/ints_gene_'+prot_type+'_'+rows[0]['GeneSymbol']+'.html'
mycontext['fam_template'] = 'GENE_PAGES/fam_gene_'+prot_type+'_'+rows[0]['GeneSymbol']+'.html'
gene_page = 'gene_page.html'
mycontext.update(csrf(request))
return render_to_response(gene_page, mycontext,context_instance=RequestContext(request))...
def get_gene_ints_page(request, prot_type, gene_symbol):
mycontext = {}
prot_type=prot_type.replace("'",'').replace('"','')
gene_symbol=gene_symbol.replace("'",'').replace('"','')
Variable | Value |
---|---|
term | u'CSF2RB' |
rows | [{'AllTree': u'Cytokine1R|GHR', 'Comments': u'', 'ENTREZ_GeneId': u'1439', 'ENTREZ_Summary': u'The protein encoded by this gene is the common beta chain of the high affinity receptor for IL-3, IL-5 and CSF. Defects in this gene have been reported to be associated with protein alveolar proteinosis (PAP). [provided by RefSeq, Jul 2008]', 'FamId': u'17.3', 'GeneName': u'colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)', 'GeneSymbol': u'CSF2RB', 'GeneSynonyms': u'INTERLEUKIN 5 RECEPTOR, BETA, IL5RB|INTERLEUKIN 3 RECEPTOR, BETA, IL3RB CSF2RB,CD131,IL3RB,IL5RB,CDw131', 'HPMR_GeneId': u'P32927', 'HPMR_ProtId': u'1', 'MatureProtName': u'Cytokine receptor common beta chain precursor', 'OMIM_ID': u'138981', 'RefSeqId': u'NP_000386', 'prot_type': u'rec'}] |
gene_page | 'gene_page.html' |
prot_type | 'rec' |
request | "<WSGIRequest\npath:/SearchDB/getGenePage.asp,\nGET:<QueryDict: {u'ProtId': [u'1'], u'Param': [u'P32927'], u'ProtType': [u'Receptor']}>,\nPOST:<QueryDict: {}>,\nCOOKIES:{},\nMETA:{'CONTEXT_DOCUMENT_ROOT': '/usr/local/apache2/htdocs',\n 'CONTEXT_PREFIX': '',\n u'CSRF_COOKIE': u'wxI0NI6oNronfigcTV3nCciCBB99i0XO',\n 'DOCUMENT_ROOT': '/usr/local/apache2/htdocs',\n 'GATEWAY_INTERFACE': 'CGI/1.1',\n 'HTTP_ACCEPT': '*/*',\n 'HTTP_CONNECTION': 'close',\n 'HTTP_FORWARDED_REQUEST_URI': '/SearchDB/getGenePage.asp?Param=P32927&ProtId=1&ProtType=Receptor',\n 'HTTP_HOST': 'www.receptome.org',\n 'HTTP_HTTPS': 'off',\n 'HTTP_USER_AGENT': 'PycURL/7.43.0.2 libcurl/7.64.0 OpenSSL/1.1.1a zlib/1.2.11 libidn2/2.1.1 libpsl/0.20.2 (+libidn2/2.1.1) libssh2/1.8.0 nghttp2/1.36.0',\n 'HTTP_X_FORWARDED_FOR': '194.94.44.220',\n 'HTTP_X_FORWARDED_HOST': 'www.receptome.org',\n 'HTTP_X_FORWARDED_PROTO': 'http',\n 'HTTP_X_FORWARDED_SERVER': 'www.receptome.org',\n 'HTTP_X_FORWARDED_SSL': 'off',\n 'LD_LIBRARY_PATH': '/home/rami/webapps/hpmr/apache2/lib:/home/rami/webapps/hpmr/lib',\n 'PATH_INFO': u'/SearchDB/getGenePage.asp',\n 'PATH_TRANSLATED': '/home/rami/webapps/hpmr/hpmr/hpmr/wsgi.py/SearchDB/getGenePage.asp',\n 'QUERY_STRING': 'Param=P32927&ProtId=1&ProtType=Receptor',\n 'REMOTE_ADDR': '127.0.0.1',\n 'REMOTE_PORT': '43956',\n 'REQUEST_METHOD': 'GET',\n 'REQUEST_SCHEME': 'http',\n 'REQUEST_URI': '/SearchDB/getGenePage.asp?Param=P32927&ProtId=1&ProtType=Receptor',\n 'SCRIPT_FILENAME': '/home/rami/webapps/hpmr/hpmr/hpmr/wsgi.py',\n 'SCRIPT_NAME': u'',\n 'SERVER_ADDR': '127.0.0.1',\n 'SERVER_ADMIN': '[no address given]',\n 'SERVER_NAME': 'www.receptome.org',\n 'SERVER_PORT': '80',\n 'SERVER_PROTOCOL': 'HTTP/1.0',\n 'SERVER_SIGNATURE': '',\n 'SERVER_SOFTWARE': 'Apache/2.4.25 (Unix) mod_wsgi/4.5.15 Python/2.7',\n 'apache.version': (2, 4, 25),\n 'mod_wsgi.application_group': 'web612.webfaction.com|',\n 'mod_wsgi.callable_object': 'application',\n 'mod_wsgi.daemon_connects': '1',\n 'mod_wsgi.daemon_restarts': '0',\n 'mod_wsgi.daemon_start': '1553792755223670',\n 'mod_wsgi.enable_sendfile': '0',\n 'mod_wsgi.handler_script': '',\n 'mod_wsgi.ignore_activity': '0',\n 'mod_wsgi.listener_host': '',\n 'mod_wsgi.listener_port': '14245',\n 'mod_wsgi.path_info': '/SearchDB/getGenePage.asp',\n 'mod_wsgi.process_group': 'hpmr',\n 'mod_wsgi.queue_start': '1553792755223517',\n 'mod_wsgi.request_handler': 'wsgi-script',\n 'mod_wsgi.request_id': 'H8k6kTIWagE',\n 'mod_wsgi.request_start': '1553792755222815',\n 'mod_wsgi.script_name': '',\n 'mod_wsgi.script_reloading': '1',\n 'mod_wsgi.script_start': '1553792755223711',\n 'mod_wsgi.thread_id': 1,\n 'mod_wsgi.thread_requests': 66952L,\n 'mod_wsgi.total_requests': 238376L,\n 'mod_wsgi.version': (4, 5, 15),\n 'wsgi.errors': <mod_wsgi.Log object at 0x7f288a4063a0>,\n 'wsgi.file_wrapper': <type 'mod_wsgi.FileWrapper'>,\n 'wsgi.input': <mod_wsgi.Input object at 0x7f288a362490>,\n 'wsgi.multiprocess': True,\n 'wsgi.multithread': True,\n 'wsgi.run_once': False,\n 'wsgi.url_scheme': 'http',\n 'wsgi.version': (1, 0)}>" |
cursor | <django.db.backends.utils.CursorDebugWrapper object at 0x7f288a31ae50> |
mycontext | {u'csrf_token': <django.utils.functional.__proxy__ object at 0x7f288a31a0d0>, 'fam_template': u'GENE_PAGES/fam_gene_rec_CSF2RB.html', 'gene': {'AllTree': u'Cytokine1R|GHR', 'Comments': u'', 'ENTREZ_GeneId': u'1439', 'ENTREZ_Summary': u'The protein encoded by this gene is the common beta chain of the high affinity receptor for IL-3, IL-5 and CSF. Defects in this gene have been reported to be associated with protein alveolar proteinosis (PAP). [provided by RefSeq, Jul 2008]', 'FamId': u'17.3', 'GeneName': u'colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)', 'GeneSymbol': u'CSF2RB', 'GeneSynonyms': u'INTERLEUKIN 5 RECEPTOR, BETA, IL5RB|INTERLEUKIN 3 RECEPTOR, BETA, IL3RB CSF2RB,CD131,IL3RB,IL5RB,CDw131', 'HPMR_GeneId': u'P32927', 'HPMR_ProtId': u'1', 'MatureProtName': u'Cytokine receptor common beta chain precursor', 'OMIM_ID': u'138981', 'RefSeqId': u'NP_000386', 'prot_type': u'rec'}, 'ints_template': u'GENE_PAGES/ints_gene_rec_CSF2RB.html', 'prot_type': 'rec'} |
SQL | u"SELECT DISTINCT * FROM GENE_PROT_ALL WHERE GeneSymbol LIKE '%CSF2RB%' OR MatureProtName LIKE '%CSF2RB%' OR GeneSynonyms LIKE '%CSF2RB%' OR ENTREZ_GeneId LIKE '%CSF2RB%'" |
gene_name | u'CSF2RB' |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/shortcuts.py
in render_to_response
# No deprecated arguments were passed - use the new code path
content = loader.render_to_string(template_name, context, using=using)
else:
# Some deprecated arguments were passed - use the legacy code path
content = loader.render_to_string(
template_name, context, context_instance, dirs, dictionary,
using=using)...
return HttpResponse(content, content_type, status)
def render(request, template_name, context=None,
context_instance=_context_instance_undefined,
Variable | Value |
---|---|
dirs | <object object at 0x7f288aec16c0> |
status | None |
content_type | None |
dictionary | <object object at 0x7f288aec16b0> |
template_name | 'gene_page.html' |
context_instance | [{'False': False, 'None': None, 'True': True}, {}, {}] |
context | {u'csrf_token': <django.utils.functional.__proxy__ object at 0x7f288a31a0d0>, 'fam_template': u'GENE_PAGES/fam_gene_rec_CSF2RB.html', 'gene': {'AllTree': u'Cytokine1R|GHR', 'Comments': u'', 'ENTREZ_GeneId': u'1439', 'ENTREZ_Summary': u'The protein encoded by this gene is the common beta chain of the high affinity receptor for IL-3, IL-5 and CSF. Defects in this gene have been reported to be associated with protein alveolar proteinosis (PAP). [provided by RefSeq, Jul 2008]', 'FamId': u'17.3', 'GeneName': u'colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)', 'GeneSymbol': u'CSF2RB', 'GeneSynonyms': u'INTERLEUKIN 5 RECEPTOR, BETA, IL5RB|INTERLEUKIN 3 RECEPTOR, BETA, IL3RB CSF2RB,CD131,IL3RB,IL5RB,CDw131', 'HPMR_GeneId': u'P32927', 'HPMR_ProtId': u'1', 'MatureProtName': u'Cytokine receptor common beta chain precursor', 'OMIM_ID': u'138981', 'RefSeqId': u'NP_000386', 'prot_type': u'rec'}, 'ints_template': u'GENE_PAGES/ints_gene_rec_CSF2RB.html', 'prot_type': 'rec'} |
using | None |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/loader.py
in render_to_string
if isinstance(engine, DjangoTemplates):
if request is not None:
raise ValueError(
"render_to_string doesn't support the request argument "
"when some deprecated arguments are passed.")
# Hack -- use the internal Engine instance of DjangoTemplates.
return engine.engine.render_to_string(
template_name, context, context_instance, dirs, dictionary)...
elif context_instance is not _context_instance_undefined:
warnings.warn(
"Skipping template backend %s because its render_to_string "
"method doesn't support the context_instance argument." %
engine.name, stacklevel=2)
elif dirs is not _dirs_undefined:
Variable | Value |
---|---|
engine | <django.template.backends.django.DjangoTemplates object at 0x7f288a47c350> |
dirs | <object object at 0x7f288aec16c0> |
dictionary | <object object at 0x7f288aec16b0> |
template_name | 'gene_page.html' |
request | None |
context_instance | [{'False': False, 'None': None, 'True': True}, {}, {}] |
context | {u'csrf_token': <django.utils.functional.__proxy__ object at 0x7f288a31a0d0>, 'fam_template': u'GENE_PAGES/fam_gene_rec_CSF2RB.html', 'gene': {'AllTree': u'Cytokine1R|GHR', 'Comments': u'', 'ENTREZ_GeneId': u'1439', 'ENTREZ_Summary': u'The protein encoded by this gene is the common beta chain of the high affinity receptor for IL-3, IL-5 and CSF. Defects in this gene have been reported to be associated with protein alveolar proteinosis (PAP). [provided by RefSeq, Jul 2008]', 'FamId': u'17.3', 'GeneName': u'colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)', 'GeneSymbol': u'CSF2RB', 'GeneSynonyms': u'INTERLEUKIN 5 RECEPTOR, BETA, IL5RB|INTERLEUKIN 3 RECEPTOR, BETA, IL3RB CSF2RB,CD131,IL3RB,IL5RB,CDw131', 'HPMR_GeneId': u'P32927', 'HPMR_ProtId': u'1', 'MatureProtName': u'Cytokine receptor common beta chain precursor', 'OMIM_ID': u'138981', 'RefSeqId': u'NP_000386', 'prot_type': u'rec'}, 'ints_template': u'GENE_PAGES/ints_gene_rec_CSF2RB.html', 'prot_type': 'rec'} |
using | None |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/engine.py
in render_to_string
else:
return t.render(Context(context))
if not context:
return t.render(context_instance)
# Add the context to the context stack, ensuring it gets removed again
# to keep the context_instance in the same state it started in.
with context_instance.push(context):
return t.render(context_instance)...
def select_template(self, template_name_list, dirs=_dirs_undefined):
"""
Given a list of template names, returns the first that can be loaded.
"""
if dirs is _dirs_undefined:
Variable | Value |
---|---|
dirs | <object object at 0x7f288aec16c0> |
dictionary | None |
template_name | 'gene_page.html' |
self | <django.template.engine.Engine object at 0x7f288a40f790> |
t | <django.template.base.Template object at 0x7f288a3bb750> |
context | {u'csrf_token': <django.utils.functional.__proxy__ object at 0x7f288a31a0d0>, 'fam_template': u'GENE_PAGES/fam_gene_rec_CSF2RB.html', 'gene': {'AllTree': u'Cytokine1R|GHR', 'Comments': u'', 'ENTREZ_GeneId': u'1439', 'ENTREZ_Summary': u'The protein encoded by this gene is the common beta chain of the high affinity receptor for IL-3, IL-5 and CSF. Defects in this gene have been reported to be associated with protein alveolar proteinosis (PAP). [provided by RefSeq, Jul 2008]', 'FamId': u'17.3', 'GeneName': u'colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)', 'GeneSymbol': u'CSF2RB', 'GeneSynonyms': u'INTERLEUKIN 5 RECEPTOR, BETA, IL5RB|INTERLEUKIN 3 RECEPTOR, BETA, IL3RB CSF2RB,CD131,IL3RB,IL5RB,CDw131', 'HPMR_GeneId': u'P32927', 'HPMR_ProtId': u'1', 'MatureProtName': u'Cytokine receptor common beta chain precursor', 'OMIM_ID': u'138981', 'RefSeqId': u'NP_000386', 'prot_type': u'rec'}, 'ints_template': u'GENE_PAGES/ints_gene_rec_CSF2RB.html', 'prot_type': 'rec'} |
context_instance | [{'False': False, 'None': None, 'True': True}, {}, {}] |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/base.py
in render
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
with context.bind_template(self):
return self._render(context)...
else:
return self._render(context)
finally:
context.render_context.pop()
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f288a3bb750> |
context | [{'False': False, 'None': None, 'True': True}, {}, {}] |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/base.py
in _render
def __iter__(self):
for node in self.nodelist:
for subnode in node:
yield subnode
def _render(self, context):
return self.nodelist.render(context)...
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f288a3bb750> |
context | [{'False': False, 'None': None, 'True': True}, {}, {}] |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <IfNode> |
bit | u'\n\n\n' |
bits | [u'<html>\n<head>\n<title>HPMR - ', u'rec', u' ', u'CSF2RB', u', ', u'Cytokine receptor common beta chain precursor', u'</title>\n<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">\n\n\n<!--WZJSGraphic Moduls /Walter Zorn--->\n<script language="JavaScript" src="http://www.appliedbioinfo.com/APBIO_MEDIA/js/hpmr/wz_jsgraphics.js" type="text/javascript"></script>\n<script language="JavaScript" src="http://www.appliedbioinfo.com/APBIO_MEDIA/js/hpmr/ints_jsgraphics.js" type="text/javascript"></script>\n\n<script src="http://code.jquery.com/jquery-1.9.1.js"></script>\n\n<script type="text/javascript" src="http://www.appliedbioinfo.net/APBIO_MEDIA/js/apbio_main.js"></script>\n<script type="text/javascript" src="http://www.appliedbioinfo.net/APBIO_MEDIA/js/bdi_main.js"></script>\n\n\n\n<script language="javascript" type="text/javascript" src="http://www.appliedbioinfo.net/APBIO_MEDIA/Chart.js"></script>\n\n<style>\nbody { font-family: Verdana, Arial, Helvetica, sans-serif; ---background-color: #FFFFFF}\n.box1 {border: solid #cccccc 1px;padding:2px;margin:2px;}\n.dashboard_block{margin:3px;padding:3px;border:solid #cccccc 3px;border-radius:5px}\n</style>\n\n</head>\n\n<script>\n//////////////////////\n\nvar varCurrExpDS = \'PreimplantMmEmbryo\';\n\n//\nfunction loadExpDS(ExpDSSelect) //varExpDS)\n{\n varExpDS = ExpDSSelect.options[ExpDSSelect.selectedIndex].value;\n if(showArray(varExpDS)==1) document.getElementById(\'ExpDSName\').innerHTML=varExpDS;\n\n return;\n}\nfunction is_ds_loaded(dsname){\n return true;\n return [\'PreimplantMmEmbryo\',\'Follicle_Maturation_and_Ovulation_POnly\',\'OocyteDevelopment\'].indexOf(dsname) > -1;\n}\n\nfunction showArray(varExpDS)\n{\n document.getElementById(\'ArrayDiv\').style.display=\'block\';\n $(\'#tmp_message\').remove();\n //////////////// TEMP MESSAGE\n if(!(is_ds_loaded(varExpDS))){\n $(\'#plot_canvass\').prepend(\'<div id="tmp_message" style="color:red; font-size:1em">GENE EXPRESSION SECTION IS UNDER MAINTENANCE. WILL BE FULLY FUNCTIONAL SOON. \'+varExpDS+\' is not loaded yet.</div>\');\n return 0;\n }\n ///////////////////////////////////////////////////////////\n\n document.getElementById(\'ShowTog\').style.display=\'none\';\n \n //draw_exp_chart();\n //return;\n \n getStuff(\'GenExp1\',\'username=', u'OKDB', u';Org=', u'', u';GId=', u'1439', u";ExpDS='+varExpDS+';PlotTitle=", u'CSF2RB', u"',true,'", u'CSF2RB', u'\');\n\tvarCurrExpDS = varExpDS;\n return 1;\n}\n</script>\n\n\n<body leftmargin="20" topmargin="5" rightmargin="20" bottommargin="20">\n\n<table border="0" width="100%" height="100%"> \n<tr><td class="frame1" valign="top">\n\n', u'\n\n<form id="formTop" action="http://www.receptome.org/SearchDB/findGenes.asp" method="get" name="formTop" target="_self">\n<span align="left" id="headtitle" class="headtitle">\n<a title="HOME" href="http://www.receptome.org/home.asp" target="_self"><img src="http://www.appliedbioinfo.com/APBIO_MEDIA/images/hpmr/Icons/hpmr_logo5.png" border="0" style="vertical-align:baseline"></a>\n</span>\n\t\n\t\n<span id="topSearch" style="display:inline">\n <font size="2" face="Times New Roman, Times, serif">\n<input class="btn" type="submit" id="Submit" value="Search" onClick="checkTopForm()">\n <input type="text" id="toptextName" name="textName" size="10">\n or <input class="btn" type="button" id="Browse" value="Browse" onClick="document.location.href=\'http://www.receptome.org/Families/FamNav/famnav.asp?undefined\'">\n</font> \n</span><img height="5" width="100%" src="http://www.appliedbioinfo.com/APBIO_MEDIA/images/hpmr/Icons/topbar1.png" >\n</form>\t\t\t\n<script language="JavaScript">\ndocument.getElementById(\'toptextName\').focus();\nfunction checkTopForm()\n{\n var tName = String(document.formTop.getElementById(\'toptextName\')).replace(/\\W/g,\'\');\t\n if(tName.length==0) \n {\n alert("Empty Query..");\n document.formTop.action = "";//document.location.href; //stay in the same page\t \n }\n}\n</script>\n\n\n\n', u'\n\... <trimmed 4101 bytes string> |
self | [<Text Node: '<html> <head> <title>HPMR'>, <Variable Node: prot_type>, <Text Node: ' '>, <Variable Node: gene.GeneSymbol>, <Text Node: ', '>, <Variable Node: gene.MatureProtName>, <Text Node: '</title> <meta http-equiv'>, <IfNode>, <Text Node: ';Org='>, <Variable Node: gene.SpeciesSelection>, <Text Node: ';GId='>, <Variable Node: gene.ENTREZ_GeneId>, <Text Node: ';ExpDS='+varExpDS+';PlotT'>, <Variable Node: gene.GeneSymbol>, <Text Node: '',true,''>, <Variable Node: gene.GeneSymbol>, <Text Node: ''); varCurrExpDS = varEx'>, <django.template.loader_tags.IncludeNode object at 0x7f288a3249d0>, <Text Node: ' '>, <IfNode>, <Text Node: ' </td></tr></table> </b'>] |
context | [{'False': False, 'None': None, 'True': True}, {}, {}] |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <IfNode> |
self | [<Text Node: '<html> <head> <title>HPMR'>, <Variable Node: prot_type>, <Text Node: ' '>, <Variable Node: gene.GeneSymbol>, <Text Node: ', '>, <Variable Node: gene.MatureProtName>, <Text Node: '</title> <meta http-equiv'>, <IfNode>, <Text Node: ';Org='>, <Variable Node: gene.SpeciesSelection>, <Text Node: ';GId='>, <Variable Node: gene.ENTREZ_GeneId>, <Text Node: ';ExpDS='+varExpDS+';PlotT'>, <Variable Node: gene.GeneSymbol>, <Text Node: '',true,''>, <Variable Node: gene.GeneSymbol>, <Text Node: ''); varCurrExpDS = varEx'>, <django.template.loader_tags.IncludeNode object at 0x7f288a3249d0>, <Text Node: ' '>, <IfNode>, <Text Node: ' </td></tr></table> </b'>] |
e | UnicodeDecodeError('utf8', '\r\r<img id="GeneIntsNode" class="paragNode" src="http://www.appliedbioinfo.com/APBIO_MEDIA/images/hpmr/Icons/open.png" --onClick="void dispFrames(\'GeneInts\')">\r<img class="paragIcon" src="http://www.appliedbioinfo.com/APBIO_MEDIA/images/hpmr/Icons/ReceptorInts.png" border="0">\r<span class="supertitle">\rReceptor CSF2RB interacts with:</span>\r <div id="GeneInts" style="display:block"><div><TABLE width=\'100%\' class=\'ints_table\' border=0 cellpadding=\'2\'><TR BgColor=\'#FFFFFF\'><td></td></TR><TR BgColor=\'#EFEFEF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=P15509&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> CSF2RA - GRANULOCYTE-MACROPHAGE COLONY-STIMULATING ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=1437&ProtId=1&ProtType=Ligand\' target=\'_self\' title=\'Click to Open Details Page\'>Ligand</a> CSF2 - GRANULOCYTE-MACROPHAGE COLONY-STIMULATING F ...</span><span style=\'margin-left: 10px\' class=\'IntRow\'><a id=\'OpenComm_973\' href=\'#\' onClick=\'document.getElementById("Comm_973").style.display="block";document.getElementById("OpenComm_973").style.display="none";\'>[read more..]</a><div id=\'Comm_973\' style=\'display: none; color: #006600;text-align: left; margin:bottom:3px\'> <a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2828352\'>DiPersio J,et al. (J Biol Chem, 1988)</a> firstly reported the CSF receptor GM-CSFR.Heterodimeric cytokine receptors generally consist of a major cytokine-binding subunit and a signaling subunit. The latter can transduce signals by more than 1 cytokine, as exemplified by the granulocyte-macrophage colony-stimulating factor (GM-CSF), interleukin-2 (IL-2), and IL-6 receptor systems <a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10753826\'>(Rossjohn et al. 2000)</a>. </div></span></td></td></TR><TR BgColor=\'#FFFFFF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=Q01344&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> IL5RA - INTERLEUKIN-5 RECEPTOR ALPHA CHAIN [PRECUR ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=3567&ProtId=1&ProtType=Ligand\' target=\'_self\' title=\'Click to Open Details Page\'>Ligand</a> IL5 - INTERLEUKIN 5 (COLONY-STIMULATING FACTOR, EO ...</span><span style=\'margin-left: 10px\' class=\'IntRow\'><a id=\'OpenComm_1506\' href=\'#\' onClick=\'document.getElementById("Comm_1506").style.display="block";document.getElementById("OpenComm_1506").style.display="none";\'>[read more..]</a><div id=\'Comm_1506\' style=\'display: none; color: #006600;text-align: left; margin:bottom:3px\'> The receptors for human IL-5, IL-3, and GM-CSF are members of the hematopoietin receptor superfamily. The high-affinity receptor complexes for each of these cytokines are composed of a ligand-specific alpha chain and a dimer of the common \xdf subunit (\xdfc) that is shared by all three cytokines<a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11748263\'>(Martinez-Moczygemba & Huston 2001)</a> </div></span></td></td></TR><TR BgColor=\'#EFEFEF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=106823&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> IL3RA - A40266 INTERLEUKIN-3 RECEPTOR ALPHA CHAIN ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=3562&ProtId=1&ProtType=Ligand\' target=\'_self\' ... <trimmed 5073 bytes string> |
context | [{'False': False, 'None': None, 'True': True}, {}, {}] |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/defaulttags.py
in render
match = condition.eval(context)
except VariableDoesNotExist:
match = None
else: # else clause
match = True
if match:
return nodelist.render(context)...
return ''
class LoremNode(Node):
def __init__(self, count, method, common):
Variable | Value |
---|---|
self | <IfNode> |
match | {'AllTree': u'Cytokine1R|GHR', 'Comments': u'', 'ENTREZ_GeneId': u'1439', 'ENTREZ_Summary': u'The protein encoded by this gene is the common beta chain of the high affinity receptor for IL-3, IL-5 and CSF. Defects in this gene have been reported to be associated with protein alveolar proteinosis (PAP). [provided by RefSeq, Jul 2008]', 'FamId': u'17.3', 'GeneName': u'colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)', 'GeneSymbol': u'CSF2RB', 'GeneSynonyms': u'INTERLEUKIN 5 RECEPTOR, BETA, IL5RB|INTERLEUKIN 3 RECEPTOR, BETA, IL3RB CSF2RB,CD131,IL3RB,IL5RB,CDw131', 'HPMR_GeneId': u'P32927', 'HPMR_ProtId': u'1', 'MatureProtName': u'Cytokine receptor common beta chain precursor', 'OMIM_ID': u'138981', 'RefSeqId': u'NP_000386', 'prot_type': u'rec'} |
nodelist | [<Text Node: ' <div class="paragraph" '>, <Variable Node: prot_type>, <Text Node: '.png"> <span class="super'>, <Variable Node: gene.GeneSymbol>, <Text Node: ' - '>, <Variable Node: gene.MatureProtName|upper>, <Text Node: '</span> <span class="titl'>, <Variable Node: prot_type>, <Text Node: ' family page" href="http:'>, <Variable Node: gene.FamId>, <Text Node: '&ProtType='>, <Variable Node: prot_type>, <Text Node: '&GeneSelected='>, <Variable Node: gene.HPMR_GeneId>, <Text Node: '">'>, <Variable Node: gene.AllTree>, <Text Node: '</a> <div style="margin-'>, <IfNode>, <Text Node: ' <span style="margin-left'>, <Variable Node: gene.ENTREZ_GeneId>, <Text Node: '" target="_blank">Entrez '>, <Variable Node: gene.OMIM_ID>, <Text Node: '" target="_blank">Omim</a'>, <IfNode>, <Text Node: ' <div class="paragraph">'>, <django.template.loader_tags.IncludeNode object at 0x7f288a324710>, <Text Node: ' </div> <div class="p'>, <django.template.loader_tags.IncludeNode object at 0x7f288a23b7d0>, <Text Node: ' </div> <div class="pa'>] |
condition | (literal <django.template.base.FilterExpression object at 0x7f288a324c50>) |
context | [{'False': False, 'None': None, 'True': True}, {}, {}] |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <django.template.loader_tags.IncludeNode object at 0x7f288a324710> |
bit | u'\n\n<div class="paragraph">\n ' |
bits | [u'\n\n<div class="paragraph" style="display:none;height: 1.5em;margin-top: 1px">\n<span class="hmenu">\n\t<span class="hmenu_element"><a href="#FamIntsParag">Interactions in Family</a></span>\n\t<span class="hmenu_element"><a href="#GenExpParag">Gene Expression</a></span>\n</span>\n</div>\n\n<div class="paragraph" style="border-top:none;margin-top: 1px;">\n<img class="paragIcon" src="http://www.appliedbioinfo.com/APBIO_MEDIA/images/hpmr/Icons/', u'rec', u'.png">\n<span class="supertitle">', u'CSF2RB', u' - ', u'CYTOKINE RECEPTOR COMMON BETA CHAIN PRECURSOR', u'</span>\n<span class="title" style="margin-left: 10px; margin-right: 3px">Family:</span><a title="go to ', u'rec', u' family page" href="http://www.receptome.org/families/frameset_family.asp?FamId=', u'17.3', u'&ProtType=', u'rec', u'&GeneSelected=', u'P32927', u'">', u'Cytokine1R|GHR', u'</a>\n\n<div style="margin-top:5px">', u'<span class="title">Synonyms:</span>INTERLEUKIN 5 RECEPTOR, BETA, IL5RB|INTERLEUKIN 3 RECEPTOR, BETA, IL3RB CSF2RB,CD131,IL3RB,IL5RB,CDw131 ', u'\n<span style="margin-left: 10px" class="title">External \n links:</span> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=Graphics&list_uids=', u'1439', u'" target="_blank">Entrez Gene</a>, <a href="http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=', u'138981', u'" target="_blank">Omim</a><!--, <a href="http://ovary.stanford.edu/" target="_blank">OKdb</a> -->\n</div>\n\n</div>\n\n', u'\t\t\n<div class="paragraph"><span class="title">Summary: <span style="font-size:85%">(from NCBI-Entrez)</span></span><br/>\n<span id="OpenSummary">\n\n<a href="#" onClick="document.getElementById(\'Summary\').style.display=\'block\';document.getElementById(\'OpenSummary\').style.display=\'none\';">..[read more]</a></span>\n<span id="Summary" style="display:none">The protein encoded by this gene is the common beta chain of the high affinity receptor for IL-3, IL-5 and CSF. Defects in this gene have been reported to be associated with protein alveolar proteinosis (PAP). [provided by RefSeq, Jul 2008]</span>\n \n</div> \n ', u'\n\n<div class="paragraph">\n '] |
self | [<Text Node: ' <div class="paragraph" '>, <Variable Node: prot_type>, <Text Node: '.png"> <span class="super'>, <Variable Node: gene.GeneSymbol>, <Text Node: ' - '>, <Variable Node: gene.MatureProtName|upper>, <Text Node: '</span> <span class="titl'>, <Variable Node: prot_type>, <Text Node: ' family page" href="http:'>, <Variable Node: gene.FamId>, <Text Node: '&ProtType='>, <Variable Node: prot_type>, <Text Node: '&GeneSelected='>, <Variable Node: gene.HPMR_GeneId>, <Text Node: '">'>, <Variable Node: gene.AllTree>, <Text Node: '</a> <div style="margin-'>, <IfNode>, <Text Node: ' <span style="margin-left'>, <Variable Node: gene.ENTREZ_GeneId>, <Text Node: '" target="_blank">Entrez '>, <Variable Node: gene.OMIM_ID>, <Text Node: '" target="_blank">Omim</a'>, <IfNode>, <Text Node: ' <div class="paragraph">'>, <django.template.loader_tags.IncludeNode object at 0x7f288a324710>, <Text Node: ' </div> <div class="p'>, <django.template.loader_tags.IncludeNode object at 0x7f288a23b7d0>, <Text Node: ' </div> <div class="pa'>] |
context | [{'False': False, 'None': None, 'True': True}, {}, {}] |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <django.template.loader_tags.IncludeNode object at 0x7f288a324710> |
self | [<Text Node: ' <div class="paragraph" '>, <Variable Node: prot_type>, <Text Node: '.png"> <span class="super'>, <Variable Node: gene.GeneSymbol>, <Text Node: ' - '>, <Variable Node: gene.MatureProtName|upper>, <Text Node: '</span> <span class="titl'>, <Variable Node: prot_type>, <Text Node: ' family page" href="http:'>, <Variable Node: gene.FamId>, <Text Node: '&ProtType='>, <Variable Node: prot_type>, <Text Node: '&GeneSelected='>, <Variable Node: gene.HPMR_GeneId>, <Text Node: '">'>, <Variable Node: gene.AllTree>, <Text Node: '</a> <div style="margin-'>, <IfNode>, <Text Node: ' <span style="margin-left'>, <Variable Node: gene.ENTREZ_GeneId>, <Text Node: '" target="_blank">Entrez '>, <Variable Node: gene.OMIM_ID>, <Text Node: '" target="_blank">Omim</a'>, <IfNode>, <Text Node: ' <div class="paragraph">'>, <django.template.loader_tags.IncludeNode object at 0x7f288a324710>, <Text Node: ' </div> <div class="p'>, <django.template.loader_tags.IncludeNode object at 0x7f288a23b7d0>, <Text Node: ' </div> <div class="pa'>] |
e | UnicodeDecodeError('utf8', '\r\r<img id="GeneIntsNode" class="paragNode" src="http://www.appliedbioinfo.com/APBIO_MEDIA/images/hpmr/Icons/open.png" --onClick="void dispFrames(\'GeneInts\')">\r<img class="paragIcon" src="http://www.appliedbioinfo.com/APBIO_MEDIA/images/hpmr/Icons/ReceptorInts.png" border="0">\r<span class="supertitle">\rReceptor CSF2RB interacts with:</span>\r <div id="GeneInts" style="display:block"><div><TABLE width=\'100%\' class=\'ints_table\' border=0 cellpadding=\'2\'><TR BgColor=\'#FFFFFF\'><td></td></TR><TR BgColor=\'#EFEFEF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=P15509&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> CSF2RA - GRANULOCYTE-MACROPHAGE COLONY-STIMULATING ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=1437&ProtId=1&ProtType=Ligand\' target=\'_self\' title=\'Click to Open Details Page\'>Ligand</a> CSF2 - GRANULOCYTE-MACROPHAGE COLONY-STIMULATING F ...</span><span style=\'margin-left: 10px\' class=\'IntRow\'><a id=\'OpenComm_973\' href=\'#\' onClick=\'document.getElementById("Comm_973").style.display="block";document.getElementById("OpenComm_973").style.display="none";\'>[read more..]</a><div id=\'Comm_973\' style=\'display: none; color: #006600;text-align: left; margin:bottom:3px\'> <a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2828352\'>DiPersio J,et al. (J Biol Chem, 1988)</a> firstly reported the CSF receptor GM-CSFR.Heterodimeric cytokine receptors generally consist of a major cytokine-binding subunit and a signaling subunit. The latter can transduce signals by more than 1 cytokine, as exemplified by the granulocyte-macrophage colony-stimulating factor (GM-CSF), interleukin-2 (IL-2), and IL-6 receptor systems <a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10753826\'>(Rossjohn et al. 2000)</a>. </div></span></td></td></TR><TR BgColor=\'#FFFFFF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=Q01344&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> IL5RA - INTERLEUKIN-5 RECEPTOR ALPHA CHAIN [PRECUR ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=3567&ProtId=1&ProtType=Ligand\' target=\'_self\' title=\'Click to Open Details Page\'>Ligand</a> IL5 - INTERLEUKIN 5 (COLONY-STIMULATING FACTOR, EO ...</span><span style=\'margin-left: 10px\' class=\'IntRow\'><a id=\'OpenComm_1506\' href=\'#\' onClick=\'document.getElementById("Comm_1506").style.display="block";document.getElementById("OpenComm_1506").style.display="none";\'>[read more..]</a><div id=\'Comm_1506\' style=\'display: none; color: #006600;text-align: left; margin:bottom:3px\'> The receptors for human IL-5, IL-3, and GM-CSF are members of the hematopoietin receptor superfamily. The high-affinity receptor complexes for each of these cytokines are composed of a ligand-specific alpha chain and a dimer of the common \xdf subunit (\xdfc) that is shared by all three cytokines<a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11748263\'>(Martinez-Moczygemba & Huston 2001)</a> </div></span></td></td></TR><TR BgColor=\'#EFEFEF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=106823&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> IL3RA - A40266 INTERLEUKIN-3 RECEPTOR ALPHA CHAIN ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=3562&ProtId=1&ProtType=Ligand\' target=\'_self\' ... <trimmed 5073 bytes string> |
context | [{'False': False, 'None': None, 'True': True}, {}, {}] |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/loader_tags.py
in render
def render(self, context):
try:
template = self.template.resolve(context)
# Does this quack like a Template?
if not callable(getattr(template, 'render', None)):
# If not, we'll try get_template
template = context.template.engine.get_template(template)...
values = {
name: var.resolve(context)
for name, var in six.iteritems(self.extra_context)
}
if self.isolated_context:
return template.render(context.new(values))
Variable | Value |
---|---|
self | <django.template.loader_tags.IncludeNode object at 0x7f288a324710> |
template | u'GENE_PAGES/ints_gene_rec_CSF2RB.html' |
context | [{'False': False, 'None': None, 'True': True}, {}, {}] |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/engine.py
in get_template
if dirs is _dirs_undefined:
dirs = None
else:
warnings.warn(
"The dirs argument of get_template is deprecated.",
RemovedInDjango110Warning, stacklevel=2)
template, origin = self.find_template(template_name, dirs)...
if not hasattr(template, 'render'):
# template needs to be compiled
template = Template(template, origin, template_name, engine=self)
return template
# This method was originally a function defined in django.template.loader.
Variable | Value |
---|---|
dirs | None |
template_name | u'GENE_PAGES/ints_gene_rec_CSF2RB.html' |
self | <django.template.engine.Engine object at 0x7f288a40f790> |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/engine.py
in find_template
else:
raise ImproperlyConfigured(
"Invalid value in template loaders configuration: %r" % loader)
def find_template(self, name, dirs=None):
for loader in self.template_loaders:
try:
source, display_name = loader(name, dirs)...
origin = self.make_origin(display_name, loader, name, dirs)
return source, origin
except TemplateDoesNotExist:
pass
raise TemplateDoesNotExist(name)
Variable | Value |
---|---|
dirs | None |
self | <django.template.engine.Engine object at 0x7f288a40f790> |
name | u'GENE_PAGES/ints_gene_rec_CSF2RB.html' |
loader | <django.template.loaders.filesystem.Loader object at 0x7f288a3d2190> |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/loaders/base.py
in __call__
# Only used to raise a deprecation warning. Remove in Django 1.10.
_accepts_engine_in_init = True
def __init__(self, engine):
self.engine = engine
def __call__(self, template_name, template_dirs=None):
return self.load_template(template_name, template_dirs)...
def load_template(self, template_name, template_dirs=None):
source, display_name = self.load_template_source(
template_name, template_dirs)
origin = self.engine.make_origin(
display_name, self.load_template_source,
Variable | Value |
---|---|
template_dirs | None |
template_name | u'GENE_PAGES/ints_gene_rec_CSF2RB.html' |
self | <django.template.loaders.filesystem.Loader object at 0x7f288a3d2190> |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/loaders/base.py
in load_template
self.engine = engine
def __call__(self, template_name, template_dirs=None):
return self.load_template(template_name, template_dirs)
def load_template(self, template_name, template_dirs=None):
source, display_name = self.load_template_source(
template_name, template_dirs)...
origin = self.engine.make_origin(
display_name, self.load_template_source,
template_name, template_dirs)
try:
template = Template(source, origin, template_name, self.engine)
Variable | Value |
---|---|
template_dirs | None |
template_name | u'GENE_PAGES/ints_gene_rec_CSF2RB.html' |
self | <django.template.loaders.filesystem.Loader object at 0x7f288a3d2190> |
/home/rami/webapps/hpmr/lib/python2.7/Django-1.8.4-py2.7.egg/django/template/loaders/filesystem.py
in load_template_source
pass
def load_template_source(self, template_name, template_dirs=None):
tried = []
for filepath in self.get_template_sources(template_name, template_dirs):
try:
with io.open(filepath, encoding=self.engine.file_charset) as fp:
return fp.read(), filepath...
except IOError:
tried.append(filepath)
if tried:
error_msg = "Tried %s" % tried
else:
error_msg = ("Your template directories configuration is empty. "
Variable | Value |
---|---|
fp | <_io.TextIOWrapper name=u'/home/rami/webapps/hpmr/hpmr/hpmr/templates/GENE_PAGES/ints_gene_rec_CSF2RB.html' encoding='utf-8'> |
template_dirs | None |
tried | [] |
filepath | u'/home/rami/webapps/hpmr/hpmr/hpmr/templates/GENE_PAGES/ints_gene_rec_CSF2RB.html' |
template_name | u'GENE_PAGES/ints_gene_rec_CSF2RB.html' |
self | <django.template.loaders.filesystem.Loader object at 0x7f288a3d2190> |
/usr/lib64/python2.7/codecs.py
in decode
# Overwrite this method in subclasses: It must decode input
# and return an (output, length consumed) tuple
raise NotImplementedError
def decode(self, input, final=False):
# decode input (taking the buffer into account)
data = self.buffer + input
(result, consumed) = self._buffer_decode(data, self.errors, final)...
# keep undecoded input until the next call
self.buffer = data[consumed:]
return result
def reset(self):
IncrementalDecoder.reset(self)
Variable | Value |
---|---|
input | '\r\r<img id="GeneIntsNode" class="paragNode" src="http://www.appliedbioinfo.com/APBIO_MEDIA/images/hpmr/Icons/open.png" --onClick="void dispFrames(\'GeneInts\')">\r<img class="paragIcon" src="http://www.appliedbioinfo.com/APBIO_MEDIA/images/hpmr/Icons/ReceptorInts.png" border="0">\r<span class="supertitle">\rReceptor CSF2RB interacts with:</span>\r <div id="GeneInts" style="display:block"><div><TABLE width=\'100%\' class=\'ints_table\' border=0 cellpadding=\'2\'><TR BgColor=\'#FFFFFF\'><td></td></TR><TR BgColor=\'#EFEFEF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=P15509&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> CSF2RA - GRANULOCYTE-MACROPHAGE COLONY-STIMULATING ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=1437&ProtId=1&ProtType=Ligand\' target=\'_self\' title=\'Click to Open Details Page\'>Ligand</a> CSF2 - GRANULOCYTE-MACROPHAGE COLONY-STIMULATING F ...</span><span style=\'margin-left: 10px\' class=\'IntRow\'><a id=\'OpenComm_973\' href=\'#\' onClick=\'document.getElementById("Comm_973").style.display="block";document.getElementById("OpenComm_973").style.display="none";\'>[read more..]</a><div id=\'Comm_973\' style=\'display: none; color: #006600;text-align: left; margin:bottom:3px\'> <a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2828352\'>DiPersio J,et al. (J Biol Chem, 1988)</a> firstly reported the CSF receptor GM-CSFR.Heterodimeric cytokine receptors generally consist of a major cytokine-binding subunit and a signaling subunit. The latter can transduce signals by more than 1 cytokine, as exemplified by the granulocyte-macrophage colony-stimulating factor (GM-CSF), interleukin-2 (IL-2), and IL-6 receptor systems <a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10753826\'>(Rossjohn et al. 2000)</a>. </div></span></td></td></TR><TR BgColor=\'#FFFFFF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=Q01344&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> IL5RA - INTERLEUKIN-5 RECEPTOR ALPHA CHAIN [PRECUR ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=3567&ProtId=1&ProtType=Ligand\' target=\'_self\' title=\'Click to Open Details Page\'>Ligand</a> IL5 - INTERLEUKIN 5 (COLONY-STIMULATING FACTOR, EO ...</span><span style=\'margin-left: 10px\' class=\'IntRow\'><a id=\'OpenComm_1506\' href=\'#\' onClick=\'document.getElementById("Comm_1506").style.display="block";document.getElementById("OpenComm_1506").style.display="none";\'>[read more..]</a><div id=\'Comm_1506\' style=\'display: none; color: #006600;text-align: left; margin:bottom:3px\'> The receptors for human IL-5, IL-3, and GM-CSF are members of the hematopoietin receptor superfamily. The high-affinity receptor complexes for each of these cytokines are composed of a ligand-specific alpha chain and a dimer of the common \xdf subunit (\xdfc) that is shared by all three cytokines<a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11748263\'>(Martinez-Moczygemba & Huston 2001)</a> </div></span></td></td></TR><TR BgColor=\'#EFEFEF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=106823&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> IL3RA - A40266 INTERLEUKIN-3 RECEPTOR ALPHA CHAIN ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=3562&ProtId=1&ProtType=Ligand\' target=\'_self\' title=\'Click to Open Detai... <trimmed 5004 bytes string> |
self | <encodings.utf_8.IncrementalDecoder object at 0x7f288a367250> |
data | '\r\r<img id="GeneIntsNode" class="paragNode" src="http://www.appliedbioinfo.com/APBIO_MEDIA/images/hpmr/Icons/open.png" --onClick="void dispFrames(\'GeneInts\')">\r<img class="paragIcon" src="http://www.appliedbioinfo.com/APBIO_MEDIA/images/hpmr/Icons/ReceptorInts.png" border="0">\r<span class="supertitle">\rReceptor CSF2RB interacts with:</span>\r <div id="GeneInts" style="display:block"><div><TABLE width=\'100%\' class=\'ints_table\' border=0 cellpadding=\'2\'><TR BgColor=\'#FFFFFF\'><td></td></TR><TR BgColor=\'#EFEFEF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=P15509&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> CSF2RA - GRANULOCYTE-MACROPHAGE COLONY-STIMULATING ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=1437&ProtId=1&ProtType=Ligand\' target=\'_self\' title=\'Click to Open Details Page\'>Ligand</a> CSF2 - GRANULOCYTE-MACROPHAGE COLONY-STIMULATING F ...</span><span style=\'margin-left: 10px\' class=\'IntRow\'><a id=\'OpenComm_973\' href=\'#\' onClick=\'document.getElementById("Comm_973").style.display="block";document.getElementById("OpenComm_973").style.display="none";\'>[read more..]</a><div id=\'Comm_973\' style=\'display: none; color: #006600;text-align: left; margin:bottom:3px\'> <a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2828352\'>DiPersio J,et al. (J Biol Chem, 1988)</a> firstly reported the CSF receptor GM-CSFR.Heterodimeric cytokine receptors generally consist of a major cytokine-binding subunit and a signaling subunit. The latter can transduce signals by more than 1 cytokine, as exemplified by the granulocyte-macrophage colony-stimulating factor (GM-CSF), interleukin-2 (IL-2), and IL-6 receptor systems <a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10753826\'>(Rossjohn et al. 2000)</a>. </div></span></td></td></TR><TR BgColor=\'#FFFFFF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=Q01344&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> IL5RA - INTERLEUKIN-5 RECEPTOR ALPHA CHAIN [PRECUR ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=3567&ProtId=1&ProtType=Ligand\' target=\'_self\' title=\'Click to Open Details Page\'>Ligand</a> IL5 - INTERLEUKIN 5 (COLONY-STIMULATING FACTOR, EO ...</span><span style=\'margin-left: 10px\' class=\'IntRow\'><a id=\'OpenComm_1506\' href=\'#\' onClick=\'document.getElementById("Comm_1506").style.display="block";document.getElementById("OpenComm_1506").style.display="none";\'>[read more..]</a><div id=\'Comm_1506\' style=\'display: none; color: #006600;text-align: left; margin:bottom:3px\'> The receptors for human IL-5, IL-3, and GM-CSF are members of the hematopoietin receptor superfamily. The high-affinity receptor complexes for each of these cytokines are composed of a ligand-specific alpha chain and a dimer of the common \xdf subunit (\xdfc) that is shared by all three cytokines<a target=\'_blank\' title=\'click to open reference in new window\' href=\'http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11748263\'>(Martinez-Moczygemba & Huston 2001)</a> </div></span></td></td></TR><TR BgColor=\'#EFEFEF\' ><td><span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=106823&ProtId=1&ProtType=Receptor\' target=\'_self\' title=\'Click to Open Details Page\'>Receptor</a> IL3RA - A40266 INTERLEUKIN-3 RECEPTOR ALPHA CHAIN ...</span> <b>and</b> <span class=\'IntRow\'><a href=\'http://www.receptome.org/SearchDB/getGenePage.asp?Param=3562&ProtId=1&ProtType=Ligand\' target=\'_self\' title=\'Click to Open Detai... <trimmed 5004 bytes string> |
final | True |
Variable | Value |
---|---|
ProtId | u'1' |
Param | u'P32927' |
ProtType | u'Receptor' |
No POST data
No FILES data
No cookie data
Variable | Value |
---|---|
mod_wsgi.listener_port | '14245' |
HTTP_X_FORWARDED_SERVER | 'www.receptome.org' |
mod_wsgi.listener_host | '' |
SERVER_PROTOCOL | 'HTTP/1.0' |
SERVER_SOFTWARE | 'Apache/2.4.25 (Unix) mod_wsgi/4.5.15 Python/2.7' |
SCRIPT_NAME | u'' |
mod_wsgi.enable_sendfile | '0' |
mod_wsgi.handler_script | '' |
SERVER_SIGNATURE | '' |
REQUEST_METHOD | 'GET' |
HTTP_HTTPS | 'off' |
PATH_INFO | u'/SearchDB/getGenePage.asp' |
HTTP_X_FORWARDED_SSL | 'off' |
QUERY_STRING | 'Param=P32927&ProtId=1&ProtType=Receptor' |
LD_LIBRARY_PATH | '/home/rami/webapps/hpmr/apache2/lib:/home/rami/webapps/hpmr/lib' |
HTTP_USER_AGENT | 'PycURL/7.43.0.2 libcurl/7.64.0 OpenSSL/1.1.1a zlib/1.2.11 libidn2/2.1.1 libpsl/0.20.2 (+libidn2/2.1.1) libssh2/1.8.0 nghttp2/1.36.0' |
HTTP_CONNECTION | 'close' |
SERVER_NAME | 'www.receptome.org' |
REMOTE_ADDR | '127.0.0.1' |
mod_wsgi.queue_start | '1553792755223517' |
mod_wsgi.request_handler | 'wsgi-script' |
apache.version | (2, 4, 25) |
mod_wsgi.thread_id | 1 |
wsgi.url_scheme | 'http' |
mod_wsgi.thread_requests | 66952L |
PATH_TRANSLATED | '/home/rami/webapps/hpmr/hpmr/hpmr/wsgi.py/SearchDB/getGenePage.asp' |
SERVER_PORT | '80' |
mod_wsgi.daemon_connects | '1' |
wsgi.multiprocess | True |
SERVER_ADDR | '127.0.0.1' |
DOCUMENT_ROOT | '/usr/local/apache2/htdocs' |
mod_wsgi.process_group | 'hpmr' |
CONTEXT_DOCUMENT_ROOT | '/usr/local/apache2/htdocs' |
HTTP_X_FORWARDED_PROTO | 'http' |
mod_wsgi.request_id | 'H8k6kTIWagE' |
SCRIPT_FILENAME | '/home/rami/webapps/hpmr/hpmr/hpmr/wsgi.py' |
SERVER_ADMIN | '[no address given]' |
mod_wsgi.ignore_activity | '0' |
wsgi.input | <mod_wsgi.Input object at 0x7f288a362490> |
HTTP_HOST | 'www.receptome.org' |
CONTEXT_PREFIX | '' |
wsgi.multithread | True |
mod_wsgi.callable_object | 'application' |
mod_wsgi.daemon_restarts | '0' |
REQUEST_URI | '/SearchDB/getGenePage.asp?Param=P32927&ProtId=1&ProtType=Receptor' |
HTTP_ACCEPT | '*/*' |
mod_wsgi.path_info | '/SearchDB/getGenePage.asp' |
HTTP_FORWARDED_REQUEST_URI | '/SearchDB/getGenePage.asp?Param=P32927&ProtId=1&ProtType=Receptor' |
wsgi.file_wrapper | '' |
wsgi.version | (1, 0) |
GATEWAY_INTERFACE | 'CGI/1.1' |
HTTP_X_FORWARDED_FOR | '194.94.44.220' |
mod_wsgi.script_name | '' |
REMOTE_PORT | '43956' |
HTTP_X_FORWARDED_HOST | 'www.receptome.org' |
REQUEST_SCHEME | 'http' |
mod_wsgi.version | (4, 5, 15) |
wsgi.run_once | False |
mod_wsgi.script_start | '1553792755223711' |
mod_wsgi.total_requests | 238376L |
mod_wsgi.application_group | 'web612.webfaction.com|' |
mod_wsgi.script_reloading | '1' |
mod_wsgi.request_start | '1553792755222815' |
CSRF_COOKIE | u'wxI0NI6oNronfigcTV3nCciCBB99i0XO' |
wsgi.errors | <mod_wsgi.Log object at 0x7f288a4063a0> |
mod_wsgi.daemon_start | '1553792755223670' |
hpmr.settings
Setting | Value |
---|---|
SECURE_BROWSER_XSS_FILTER | False |
USE_THOUSAND_SEPARATOR | False |
CSRF_COOKIE_SECURE | False |
LANGUAGE_CODE | 'en-us' |
ROOT_URLCONF | 'hpmr.urls' |
MANAGERS | () |
BASE_DIR | '/home/rami/webapps/hpmr/hpmr' |
SILENCED_SYSTEM_CHECKS | [] |
DEFAULT_CHARSET | 'utf-8' |
SESSION_SERIALIZER | 'django.contrib.sessions.serializers.JSONSerializer' |
STATIC_ROOT | None |
ALLOWED_HOSTS | ['*'] |
MESSAGE_STORAGE | 'django.contrib.messages.storage.fallback.FallbackStorage' |
EMAIL_SUBJECT_PREFIX | '[Django] ' |
SERVER_EMAIL | 'root@localhost' |
SECURE_HSTS_SECONDS | 0 |
STATICFILES_FINDERS | ('django.contrib.staticfiles.finders.FileSystemFinder', 'django.contrib.staticfiles.finders.AppDirectoriesFinder') |
SESSION_CACHE_ALIAS | 'default' |
SESSION_COOKIE_DOMAIN | None |
SESSION_COOKIE_NAME | 'sessionid' |
TIME_INPUT_FORMATS | ('%H:%M:%S', '%H:%M:%S.%f', '%H:%M') |
SECURE_REDIRECT_EXEMPT | [] |
DATABASES | {'bdi': {'ATOMIC_REQUESTS': False, 'AUTOCOMMIT': True, 'CONN_MAX_AGE': 0, 'ENGINE': 'django.db.backends.sqlite3', 'HOST': '', 'NAME': '/home/rami/webapps/hpmr/hpmr/bdi_db', 'OPTIONS': {}, 'PASSWORD': u'********************', 'PORT': '', 'TEST': {'CHARSET': None, 'COLLATION': None, 'MIRROR': None, 'NAME': None}, 'TIME_ZONE': 'UTC', 'USER': ''}, 'default': {'ATOMIC_REQUESTS': False, 'AUTOCOMMIT': True, 'CONN_MAX_AGE': 0, 'ENGINE': 'django.db.backends.sqlite3', 'HOST': '', 'NAME': '/home/rami/webapps/hpmr/hpmr/hpmr_db', 'OPTIONS': {}, 'PASSWORD': u'********************', 'PORT': '', 'TEST': {'CHARSET': None, 'COLLATION': None, 'MIRROR': None, 'NAME': None}, 'TIME_ZONE': 'UTC', 'USER': ''}} |
EMAIL_SSL_KEYFILE | u'********************' |
FILE_UPLOAD_DIRECTORY_PERMISSIONS | None |
FILE_UPLOAD_PERMISSIONS | None |
FILE_UPLOAD_HANDLERS | ('django.core.files.uploadhandler.MemoryFileUploadHandler', 'django.core.files.uploadhandler.TemporaryFileUploadHandler') |
DEFAULT_CONTENT_TYPE | 'text/html' |
APPEND_SLASH | True |
LOCALE_PATHS | () |
DATABASE_ROUTERS | [] |
DEFAULT_TABLESPACE | '' |
YEAR_MONTH_FORMAT | 'F Y' |
STATICFILES_STORAGE | 'django.contrib.staticfiles.storage.StaticFilesStorage' |
CACHES | {'default': {'BACKEND': 'django.core.cache.backends.locmem.LocMemCache'}} |
SESSION_COOKIE_PATH | '/' |
SECURE_CONTENT_TYPE_NOSNIFF | False |
MIDDLEWARE_CLASSES | ('django.contrib.sessions.middleware.SessionMiddleware', 'django.middleware.common.CommonMiddleware', 'django.middleware.csrf.CsrfViewMiddleware', 'django.contrib.auth.middleware.AuthenticationMiddleware', 'django.contrib.auth.middleware.SessionAuthenticationMiddleware', 'django.contrib.messages.middleware.MessageMiddleware', 'django.middleware.clickjacking.XFrameOptionsMiddleware', 'django.middleware.security.SecurityMiddleware') |
USE_I18N | False |
THOUSAND_SEPARATOR | ',' |
SECRET_KEY | u'********************' |
LANGUAGE_COOKIE_NAME | 'django_language' |
DEFAULT_INDEX_TABLESPACE | '' |
LOGGING_CONFIG | 'logging.config.dictConfig' |
TEMPLATE_LOADERS | ('django.template.loaders.filesystem.Loader', 'django.template.loaders.app_directories.Loader') |
FIRST_DAY_OF_WEEK | 0 |
WSGI_APPLICATION | 'hpmr.wsgi.application' |
TEMPLATE_DEBUG | False |
X_FRAME_OPTIONS | 'SAMEORIGIN' |
CSRF_COOKIE_NAME | 'csrftoken' |
FORCE_SCRIPT_NAME | None |
USE_X_FORWARDED_HOST | False |
EMAIL_TIMEOUT | None |
SECURE_SSL_HOST | None |
SIGNING_BACKEND | 'django.core.signing.TimestampSigner' |
SESSION_COOKIE_SECURE | False |
CSRF_COOKIE_DOMAIN | None |
FILE_CHARSET | 'utf-8' |
DEBUG | True |
LANGUAGE_COOKIE_DOMAIN | None |
DEFAULT_FILE_STORAGE | 'django.core.files.storage.FileSystemStorage' |
INSTALLED_APPS | ('django.contrib.admin', 'django.contrib.auth', 'django.contrib.contenttypes', 'django.contrib.sessions', 'django.contrib.messages', 'django.contrib.staticfiles', 'bdi') |
LANGUAGES | (('af', 'Afrikaans'), ('ar', 'Arabic'), ('ast', 'Asturian'), ('az', 'Azerbaijani'), ('bg', 'Bulgarian'), ('be', 'Belarusian'), ('bn', 'Bengali'), ('br', 'Breton'), ('bs', 'Bosnian'), ('ca', 'Catalan'), ('cs', 'Czech'), ('cy', 'Welsh'), ('da', 'Danish'), ('de', 'German'), ('el', 'Greek'), ('en', 'English'), ('en-au', 'Australian English'), ('en-gb', 'British English'), ('eo', 'Esperanto'), ('es', 'Spanish'), ('es-ar', 'Argentinian Spanish'), ('es-mx', 'Mexican Spanish'), ('es-ni', 'Nicaraguan Spanish'), ('es-ve', 'Venezuelan Spanish'), ('et', 'Estonian'), ('eu', 'Basque'), ('fa', 'Persian'), ('fi', 'Finnish'), ('fr', 'French'), ('fy', 'Frisian'), ('ga', 'Irish'), ('gl', 'Galician'), ('he', 'Hebrew'), ('hi', 'Hindi'), ('hr', 'Croatian'), ('hu', 'Hungarian'), ('ia', 'Interlingua'), ('id', 'Indonesian'), ('io', 'Ido'), ('is', 'Icelandic'), ('it', 'Italian'), ('ja', 'Japanese'), ('ka', 'Georgian'), ('kk', 'Kazakh'), ('km', 'Khmer'), ('kn', 'Kannada'), ('ko', 'Korean'), ('lb', 'Luxembourgish'), ('lt', 'Lithuanian'), ('lv', 'Latvian'), ('mk', 'Macedonian'), ('ml', 'Malayalam'), ('mn', 'Mongolian'), ('mr', 'Marathi'), ('my', 'Burmese'), ('nb', 'Norwegian Bokmal'), ('ne', 'Nepali'), ('nl', 'Dutch'), ('nn', 'Norwegian Nynorsk'), ('os', 'Ossetic'), ('pa', 'Punjabi'), ('pl', 'Polish'), ('pt', 'Portuguese'), ('pt-br', 'Brazilian Portuguese'), ('ro', 'Romanian'), ('ru', 'Russian'), ('sk', 'Slovak'), ('sl', 'Slovenian'), ('sq', 'Albanian'), ('sr', 'Serbian'), ('sr-latn', 'Serbian Latin'), ('sv', 'Swedish'), ('sw', 'Swahili'), ('ta', 'Tamil'), ('te', 'Telugu'), ('th', 'Thai'), ('tr', 'Turkish'), ('tt', 'Tatar'), ('udm', 'Udmurt'), ('uk', 'Ukrainian'), ('ur', 'Urdu'), ('vi', 'Vietnamese'), ('zh-cn', 'Simplified Chinese'), ('zh-hans', 'Simplified Chinese'), ('zh-hant', 'Traditional Chinese'), ('zh-tw', 'Traditional Chinese')) |
USE_L10N | True |
SECURE_HSTS_INCLUDE_SUBDOMAINS | False |
STATICFILES_DIRS | () |
PREPEND_WWW | False |
SECURE_PROXY_SSL_HEADER | None |
LANGUAGE_COOKIE_AGE | None |
SESSION_COOKIE_HTTPONLY | True |
DEBUG_PROPAGATE_EXCEPTIONS | False |
CSRF_COOKIE_AGE | 31449600 |
MONTH_DAY_FORMAT | 'F j' |
LOGIN_URL | '/accounts/login/' |
SESSION_EXPIRE_AT_BROWSER_CLOSE | False |
TIME_FORMAT | 'P' |
AUTH_USER_MODEL | 'auth.User' |
DATE_INPUT_FORMATS | ('%Y-%m-%d', '%m/%d/%Y', '%m/%d/%y', '%b %d %Y', '%b %d, %Y', '%d %b %Y', '%d %b, %Y', '%B %d %Y', '%B %d, %Y', '%d %B %Y', '%d %B, %Y') |
AUTHENTICATION_BACKENDS | ('django.contrib.auth.backends.ModelBackend',) |
EMAIL_HOST_PASSWORD | u'********************' |
PASSWORD_RESET_TIMEOUT_DAYS | u'********************' |
SESSION_FILE_PATH | None |
CACHE_MIDDLEWARE_ALIAS | 'default' |
SESSION_SAVE_EVERY_REQUEST | False |
NUMBER_GROUPING | 0 |
SESSION_ENGINE | 'django.contrib.sessions.backends.db' |
CSRF_FAILURE_VIEW | 'django.views.csrf.csrf_failure' |
CSRF_COOKIE_PATH | '/' |
LOGIN_REDIRECT_URL | '/accounts/profile/' |
DECIMAL_SEPARATOR | '.' |
IGNORABLE_404_URLS | () |
MIGRATION_MODULES | {} |
TEMPLATE_STRING_IF_INVALID | '' |
LOGOUT_URL | '/accounts/logout/' |
EMAIL_USE_TLS | False |
FIXTURE_DIRS | () |
EMAIL_HOST | 'localhost' |
DATE_FORMAT | 'N j, Y' |
MEDIA_ROOT | '' |
DEFAULT_EXCEPTION_REPORTER_FILTER | 'django.views.debug.SafeExceptionReporterFilter' |
ADMINS | () |
FORMAT_MODULE_PATH | None |
DEFAULT_FROM_EMAIL | 'webmaster@localhost' |
MEDIA_URL | '' |
DATETIME_FORMAT | 'N j, Y, P' |
TEMPLATE_DIRS | () |
DISALLOWED_USER_AGENTS | () |
ALLOWED_INCLUDE_ROOTS | () |
LOGGING | {} |
SHORT_DATE_FORMAT | 'm/d/Y' |
TEMPLATES | [{'APP_DIRS': True, 'BACKEND': 'django.template.backends.django.DjangoTemplates', 'DIRS': ['/home/rami/webapps/hpmr/hpmr/hpmr/templates'], 'OPTIONS': {'context_processors': ['django.template.context_processors.debug', 'django.template.context_processors.request', 'django.contrib.auth.context_processors.auth', 'django.contrib.messages.context_processors.messages']}}] |
TEST_RUNNER | 'django.test.runner.DiscoverRunner' |
CACHE_MIDDLEWARE_KEY_PREFIX | u'********************' |
SECURE_SSL_REDIRECT | False |
TIME_ZONE | 'America/Los_Angeles' |
FILE_UPLOAD_MAX_MEMORY_SIZE | 2621440 |
EMAIL_BACKEND | 'django.core.mail.backends.smtp.EmailBackend' |
EMAIL_USE_SSL | False |
TEMPLATE_CONTEXT_PROCESSORS | ('django.contrib.auth.context_processors.auth', 'django.template.context_processors.debug', 'django.template.context_processors.i18n', 'django.template.context_processors.media', 'django.template.context_processors.static', 'django.template.context_processors.tz', 'django.contrib.messages.context_processors.messages') |
SESSION_COOKIE_AGE | 1209600 |
SETTINGS_MODULE | 'hpmr.settings' |
USE_ETAGS | False |
LANGUAGES_BIDI | ('he', 'ar', 'fa', 'ur') |
FILE_UPLOAD_TEMP_DIR | None |
INTERNAL_IPS | () |
STATIC_URL | '/static/' |
EMAIL_PORT | 25 |
USE_TZ | True |
SHORT_DATETIME_FORMAT | 'm/d/Y P' |
TEST_NON_SERIALIZED_APPS | [] |
PASSWORD_HASHERS | u'********************' |
ABSOLUTE_URL_OVERRIDES | {} |
LANGUAGE_COOKIE_PATH | '/' |
CACHE_MIDDLEWARE_SECONDS | 600 |
EMAIL_SSL_CERTFILE | None |
CSRF_COOKIE_HTTPONLY | False |
DATETIME_INPUT_FORMATS | ('%Y-%m-%d %H:%M:%S', '%Y-%m-%d %H:%M:%S.%f', '%Y-%m-%d %H:%M', '%Y-%m-%d', '%m/%d/%Y %H:%M:%S', '%m/%d/%Y %H:%M:%S.%f', '%m/%d/%Y %H:%M', '%m/%d/%Y', '%m/%d/%y %H:%M:%S', '%m/%d/%y %H:%M:%S.%f', '%m/%d/%y %H:%M', '%m/%d/%y') |
EMAIL_HOST_USER | '' |
You're seeing this error because you have DEBUG = True
in your
Django settings file. Change that to False
, and Django will
display a standard page generated by the handler for this status code.