Bkca / TRP channels
Name: Calcium-activated potassium channel subunit alpha-1
(Bkca)
Official Symbol: KCNMA1
provided by HGNC
Function:
Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).
Source: Reorganizing the protein space at the Universal Protein Resource (UniProt)
Nucleic Acids Res. 40: D71-D75 (2012).
Species | External DB | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Entrez Gene | UniprotKB | DIP | IntAct | MINT | BioGRID | STRING | IUPHAR-DB | KEGG | OMIM | |
Human
|
3778 | Q12791 | DIP-29729N | Q12791 | MINT-4825316 | 109979 | Q12791 | hsa:3778 | 600150 | |
Mouse
|
16531 | Q08460 | DIP-42413N | Q08460 | MINT-1203219 | 200913 | Q08460 | mmu:16531 | ||
Rat
|
83731 | Q62976 | DIP-40510N | Q62976 | MINT-1203282 | 249823 | Q62976 | rno:83731 |
Biological Process:
- GO:0007596 : blood coagulation
- GO:0030007 : cellular potassium ion homeostasis
- GO:0045794 : negative regulation of cell volume
- GO:0043065 : positive regulation of apoptotic process
- GO:0042391 : regulation of membrane potential
- GO:0051592 : response to calcium ion
- GO:0034465 : response to carbon monoxide
- GO:0001666 : response to hypoxia
- GO:0006970 : response to osmotic stress
- GO:0060083 : smooth muscle contraction involved in micturition
- GO:0007268 : synaptic transmission
Source: The Gene Ontology Consortium. Gene ontology: tool for the unification of biology. Nat. Genet.. May 2000;25(1):25-9.
World Wide Web URL: http://www.geneontology.org/
World Wide Web URL: http://www.geneontology.org/
Disease:
- OMIM:600150 : Generalized epilepsy and paroxysmal dyskinesia (OMIM:609446 )
Source: Online Mendelian Inheritance in Man, OMIM®. McKusick-Nathans Institute of Genetic Medicine,
Johns Hopkins University (Baltimore, MD), May, 2012.
World Wide Web URL: http://omim.org/
World Wide Web URL: http://omim.org/
Screening Validation: In vitro validation Validation: In vivo validation Characterization Functional consequence | top |
Screening | ||||||||||
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Experimental screening | Non-experimental screening | Reference | ||||||||
TRP channel construct | Interactor source | |||||||||
TRP channel | Interactor | Method | Species | Region | Species | Organ/tissue | Sample type | |||
TRPC1 | BKca | Inference | Prediction | 19168436 | ||||||
TRPC3 | BKca | Inference | Prediction | 19052171 | ||||||
TRPC6 | BKca | Inference | Prediction | 19052171 | ||||||
TRPV1 | BKca | Inference | Prediction | 24147119 | ||||||
TRPV4 | Bkca | Inference | Prediction | 25139746 |
(:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
Screening Validation: In vitro validation Validation: In vivo validation Characterization Functional consequence | top |
Validation: In vitro validation | ||||||||||
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Assay with recombinant proteins | Reference | |||||||||
TRP channel construct | Interactor construct | |||||||||
TRP channel | Interactor | Method | Species | Region | Expression system | Species | Region | Expression system | ||
TRPC3 | BKca | Fusion protein-pull down assay | Not used | Mouse podocyte lysates | Chicken | Full-length | E. coli | 19052171 | ||
TRPC6 | BKca | Fusion protein-pull down assay | Not used | Mouse podocyte lysates | Chicken | Full-length | E. coli | 19052171 |
(:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
Screening Validation: In vitro validation Validation: In vivo validation Characterization Functional consequence | top |
Validation: In vivo validation | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Assay with endogenous proteins | Assay with overexpressed proteins | Reference | ||||||||
Cell or tissue | Cell or tissue | TRP channel construct | Interactor construct | |||||||
TRP channel | Interactor | Method | Species | Region | Species | Region | ||||
TRPC1 | BKca | Co-immunofluorescence staining | Rat aortic vascular smooth muscle cell | 19168436 | ||||||
TRPC1 | BKca | Co-immunoprecipitation | HEK293 | Human | Full-length | Human | Full-length | 19168436 | ||
TRPC1 | BKca | Co-immunoprecipitation | Rat vascular smooth muscle cell | 19168436 | ||||||
TRPC1 | Bkca | Co-immunoprecipitation | Porcine coronary artery | 25139746 | ||||||
TRPC3 | BKca | Co-immunofluorescence staining | HEK293T | Not specified | Full-length | Not specified | Full-length | 19052171 | ||
TRPC3 | BKca | Co-immunoprecipitation | Mouse podocyte lysates | 19052171 | ||||||
TRPC3 | BKca | Co-immunoprecipitation | HEK293T | Not specified | Full-length | Not specified | Full-length | 19052171 | ||
TRPC6 | BKca | Co-immunofluorescence staining | HEK293T | Not specified | Full-length | Not specified | Full-length | 19052171 | ||
TRPC6 | BKca | Co-immunoprecipitation | Mouse podocyte lysates | 19052171 | ||||||
TRPC6 | BKca | Co-immunoprecipitation | HEK293T | Not specified | Full-length | Not specified | Full-length | 19052171 | ||
TRPV1 | BKca | Co-immunofluorescence staining | HEK293 | Mouse | Full-length | Human | Full-length | 24147119 | ||
TRPV1 | BKca | Co-immunoprecipitation | HEK293 | Mouse | Full-length | Human | Full-length | 24147119 | ||
TRPV1 | BKca | Co-immunoprecipitation | Rat dorsal root ganglion neuron | 24147119 | ||||||
TRPV4 | Bkca | Co-immunoprecipitation | Porcine coronary artery | 25139746 |
(:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)