IFIT1 / TRP channels
Name: Interferon-induced protein with tetratricopeptide repeats 1
(IFIT1)
Official Symbol: IFIT1
provided by HGNC
Function:
Interferon-induced antiviral RNA-binding protein that specifically binds single-stranded RNA bearing a 5'-triphosphate group (PPP-RNA), thereby acting as a sensor of viral single-stranded RNAs and inhibiting expression of viral messenger RNAs. Single-stranded PPP-RNAs, which lack 2'-O-methylation of the 5' cap and bear a 5'-triphosphate group instead, are specific from viruses, providing a molecular signature to distinguish between self and non-self mRNAs by the host during viral infection. Directly binds PPP-RNA in a non-sequence-specific manner. Viruses evolved several ways to evade this restriction system such as encoding their own 2'-O-methylase for their mRNAs or by stealing host cap containing the 2'-O-methylation (cap snatching mechanism). Exhibits antiviral activity against several viruses including human papilloma and hepatitis C viruses.
Source: Reorganizing the protein space at the Universal Protein Resource (UniProt)
Nucleic Acids Res. 40: D71-D75 (2012).
| Species |
External DB
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|---|---|---|---|---|---|---|---|---|---|---|
| Entrez Gene | UniprotKB | DIP | IntAct | MINT | BioGRID | STRING | IUPHAR-DB | KEGG | OMIM | |
Human
|
3434 |
P09914 |
DIP-37898N |
P09914 |
MINT-153827 |
109659 |
P09914 |
hsa:3434 |
147690 |
|
Mouse
|
15957 |
Q64282 |
200525 |
Q64282 |
mmu:15957 |
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Rat
|
56824 |
Q9JJT1 |
248597 |
Q9JJT1 |
rno:56824 |
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PPI pairs:
Biological Process:
- GO:0071360
: cellular response to exogenous dsRNA - GO:0051607
: defense response to virus - GO:0019060
: intracellular transport of viral proteins in host cell - GO:0050689
: negative regulation of defense response to virus by host - GO:0051097
: negative regulation of helicase activity - GO:0032091
: negative regulation of protein binding - GO:0045071
: negative regulation of viral genome replication - GO:0045070
: positive regulation of viral genome replication - GO:0009615
: response to virus - GO:0060337
: type I interferon-mediated signaling pathway
Source: The Gene Ontology Consortium. Gene ontology: tool for the unification of biology. Nat. Genet.. May 2000;25(1):25-9.
World Wide Web URL: http://www.geneontology.org/
World Wide Web URL: http://www.geneontology.org/
Disease:
No information in OMIM
Source: Online Mendelian Inheritance in Man, OMIM®. McKusick-Nathans Institute of Genetic Medicine,
Johns Hopkins University (Baltimore, MD), May, 2012.
World Wide Web URL: http://omim.org/
World Wide Web URL: http://omim.org/
Screening
Validation: In vitro validation
Validation: In vivo validation
Characterization
Functional consequence
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top
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Screening
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| Experimental screening | Non-experimental screening | Reference | ||||||||
| TRP channel construct | Interactor source | |||||||||
| TRP channel | Interactor | Method | Species | Region | Species | Organ/tissue | Sample type | |||
| TRPP1 |
|
IFIT1 | Affinity purification-mass spectrometry | Mouse | Not specified | Mouse | Vascular smooth muscle | MOVAS lysates | 19879844 | |
(
:
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:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)







Screening