Rac1 / TRP channels
Name: Ras-related C3 botulinum toxin substrate 1
(Rac1)
Official Symbol: RAC1
provided by HGNC
Function:
Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. In glioma cells, promotes cell migration and invasion. In podocytes, promotes nuclear shuttling of NR3C2; this modulation is required for a proper kidney functioning. Required for atypical chemokine receptor ACKR2-induced LIMK1-PAK1-dependent phosphorylation of cofilin (CFL1) and for up-regulation of ACKR2 from endosomal compartment to cell membrane, increasing its efficiency in chemokine uptake and degradation. In synapses, seems to mediate the regulation of F-actin cluster formation performed by SHANK3.Isoform B has an accelerated GEF-independent GDP/GTP exchange and an impaired GTP hydrolysis, which is restored partially by GTPase-activating proteins. It is able to bind to the GTPase-binding domain of PAK but not full-length PAK in a GTP-dependent manner, suggesting that the insertion does not completely abolish effector interaction.
Source: Reorganizing the protein space at the Universal Protein Resource (UniProt)
Nucleic Acids Res. 40: D71-D75 (2012).
| Species |
External DB
|
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|---|---|---|---|---|---|---|---|---|---|---|
| Entrez Gene | UniprotKB | DIP | IntAct | MINT | BioGRID | STRING | IUPHAR-DB | KEGG | OMIM | |
Human
|
5879 |
P63000 |
DIP-29260N |
P63000 |
MINT-4999291 |
111817 |
P63000 |
hsa:5879 |
602048 |
|
Mouse
|
19353 |
P63001 |
DIP-31545N |
P63001 |
MINT-1602774 |
202556 |
P63001 |
mmu:19353 |
||
Rat
|
363875 |
Q6RUV5 |
DIP-37114N |
Q6RUV5 |
MINT-4577150 |
264467 |
Q6RUV5 |
rno:363875 |
||
Biological Process:
- GO:0030041
: actin filament polymerization - GO:0048532
: anatomical structure arrangement - GO:0097190
: apoptotic signaling pathway - GO:0002093
: auditory receptor cell morphogenesis - GO:0007411
: axon guidance - GO:0045453
: bone resorption - GO:0048870
: cell motility - GO:0008283
: cell proliferation - GO:0045216
: cell-cell junction organization - GO:0007160
: cell-matrix adhesion - GO:0021799
: cerebral cortex radially oriented cell migration - GO:0090103
: cochlea morphogenesis - GO:0048813
: dendrite morphogenesis - GO:0071542
: dopaminergic neuron differentiation - GO:0021831
: embryonic olfactory bulb interneuron precursor migration - GO:0043652
: engulfment of apoptotic cell - GO:0003382
: epithelial cell morphogenesis - GO:0038095
: Fc-epsilon receptor signaling pathway - GO:0038096
: Fc-gamma receptor signaling pathway involved in phagocytosis - GO:0006972
: hyperosmotic response - GO:0006954
: inflammatory response - GO:0045087
: innate immune response - GO:0035556
: intracellular signal transduction - GO:0030032
: lamellipodium assembly - GO:0051668
: localization within membrane - GO:0002551
: mast cell chemotaxis - GO:0032707
: negative regulation of interleukin-23 production - GO:0048261
: negative regulation of receptor-mediated endocytosis - GO:0048011
: neurotrophin TRK receptor signaling pathway - GO:0030168
: platelet activation - GO:0030838
: positive regulation of actin filament polymerization - GO:0043065
: positive regulation of apoptotic process - GO:0045740
: positive regulation of DNA replication - GO:0010592
: positive regulation of lamellipodium assembly - GO:0043552
: positive regulation of phosphatidylinositol 3-kinase activity - GO:0001934
: positive regulation of protein phosphorylation - GO:0035025
: positive regulation of Rho protein signal transduction - GO:0030334
: regulation of cell migration - GO:0050690
: regulation of defense response to virus by virus - GO:0010310
: regulation of hydrogen peroxide metabolic process - GO:0060263
: regulation of respiratory burst - GO:0097178
: ruffle assembly - GO:0031529
: ruffle organization - GO:0071526
: semaphorin-plexin signaling pathway - GO:0007264
: small GTPase mediated signal transduction - GO:0034446
: substrate adhesion-dependent cell spreading - GO:0031295
: T cell costimulation - GO:0016032
: viral process - GO:0060071
: Wnt signaling pathway, planar cell polarity pathway
Source: The Gene Ontology Consortium. Gene ontology: tool for the unification of biology. Nat. Genet.. May 2000;25(1):25-9.
World Wide Web URL: http://www.geneontology.org/
World Wide Web URL: http://www.geneontology.org/
Disease:
No information in OMIM
Source: Online Mendelian Inheritance in Man, OMIM®. McKusick-Nathans Institute of Genetic Medicine,
Johns Hopkins University (Baltimore, MD), May, 2012.
World Wide Web URL: http://omim.org/
World Wide Web URL: http://omim.org/
Screening
Validation: In vitro validation
Validation: In vivo validation
Characterization
Functional consequence
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top
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Screening
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|---|---|---|---|---|---|---|---|---|---|---|
| Experimental screening | Non-experimental screening | Reference | ||||||||
| TRP channel construct | Interactor source | |||||||||
| TRP channel | Interactor | Method | Species | Region | Species | Organ/tissue | Sample type | |||
| TRPM2 |
|
Rac1 | Inference | Prediction | 25295536 | |||||
| TRPML1 |
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Rac1 | Speculation | Prediction | 23418601 | |||||
(
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
Screening
Validation: In vitro validation
Validation: In vivo validation
Characterization
Functional consequence
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top
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Validation: In vitro validation
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|---|---|---|---|---|---|---|---|---|---|---|
| Assay with recombinant proteins | Reference | |||||||||
| TRP channel construct | Interactor construct | |||||||||
| TRP channel | Interactor | Method | Species | Region | Expression system | Species | Region | Expression system | ||
| TRPML1 |
|
Rac1 | Split-Ubiquitin Yeast two-hybrid | Mouse | Full-length | Yeast | Mouse | Full-length | Yeast | 23418601 |
(
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
Screening
Validation: In vitro validation
Validation: In vivo validation
Characterization
Functional consequence
|
top
|
Validation: In vivo validation
|
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|---|---|---|---|---|---|---|---|---|---|---|
| Assay with endogenous proteins | Assay with overexpressed proteins | Reference | ||||||||
| Cell or tissue | Cell or tissue | TRP channel construct | Interactor construct | |||||||
| TRP channel | Interactor | Method | Species | Region | Species | Region | ||||
| TRPM2 |
|
Rac1 | Co-immunofluorescence staining | Mouse kidney section | Human | Full-length | Human | Full-length | 25295536 | |
| TRPM2 |
|
Rac1 | Co-immunoprecipitation | HEK293 | Human | Full-length | Human | Full-length | 25295536 | |
| TRPML1 |
|
Rac1 | Co-immunoprecipitation | HeLa | Mouse | Full-length | Mouse | Full-length | 23418601 | |
(
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)







Screening