SNAPIN / TRP channels
Name: SNARE-associated protein Snapin
(SNAPIN)
Official Symbol: SNAPIN
provided by HGNC
Function:
Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO), such as platelet dense granules and melanosomes. In concert with the AP-3 complex, the BLOC-1 complex is required to target membrane protein cargos into vesicles assembled at cell bodies for delivery into neurites and nerve terminals. The BLOC-1 complex, in association with SNARE proteins, is also proposed to be involved in neurite extension. Plays a role in intracellular vesicle trafficking. May modulate a step between vesicle priming, fusion and calcium-dependent neurotransmitter release through its ability to potentiate the interaction of synaptotagmin with the SNAREs and the plasma-membrane-associated protein SNAP25. Its phosphorylation state influences exocytotic protein interactions and may regulate synaptic vesicle exocytosis. May also have a role in the mechanisms of SNARE-mediated membrane fusion in non-neuronal cells.
Source: Reorganizing the protein space at the Universal Protein Resource (UniProt)
Nucleic Acids Res. 40: D71-D75 (2012).
| Species |
External DB
|
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|---|---|---|---|---|---|---|---|---|---|---|
| Entrez Gene | UniprotKB | DIP | IntAct | MINT | BioGRID | STRING | IUPHAR-DB | KEGG | OMIM | |
Human
|
23557 |
O95295 |
DIP-31359N |
O95295 |
MINT-5002303 |
117101 |
O95295 |
hsa:23557 |
607007 |
|
Mouse
|
20615 |
Q9Z266 |
DIP-44321N |
Q9Z266 |
MINT-3389684 |
203363 |
Q9Z266 |
mmu:20615 |
||
Rat
|
295217 |
P60192 |
DIP-37034N |
P60192 |
MINT-3389957 |
254916 |
P60192 |
rno:295217 |
||
Biological Process:
- GO:0008089
: anterograde axon cargo transport - GO:0048490
: anterograde synaptic vesicle transport - GO:0006886
: intracellular protein transport - GO:0032438
: melanosome organization - GO:0031175
: neuron projection development - GO:0016079
: synaptic vesicle exocytosis - GO:0031629
: synaptic vesicle fusion to presynaptic membrane - GO:0016188
: synaptic vesicle maturation - GO:0072553
: terminal button organization - GO:0019048
: virus-host interaction
Source: The Gene Ontology Consortium. Gene ontology: tool for the unification of biology. Nat. Genet.. May 2000;25(1):25-9.
World Wide Web URL: http://www.geneontology.org/
World Wide Web URL: http://www.geneontology.org/
Disease:
No information in OMIM
Source: Online Mendelian Inheritance in Man, OMIM®. McKusick-Nathans Institute of Genetic Medicine,
Johns Hopkins University (Baltimore, MD), May, 2012.
World Wide Web URL: http://omim.org/
World Wide Web URL: http://omim.org/
Screening
Validation: In vitro validation
Validation: In vivo validation
Characterization
Functional consequence
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top
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Screening
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|---|---|---|---|---|---|---|---|---|---|---|
| Experimental screening | Non-experimental screening | Reference | ||||||||
| TRP channel construct | Interactor source | |||||||||
| TRP channel | Interactor | Method | Species | Region | Species | Organ/tissue | Sample type | |||
| TRPC6 |
|
SNAPIN | Inference | Prediction | 17684020 | |||||
| TRPM7 |
|
SNAPIN | Yeast two-hybrid | Human | 87-326 | Human | Brain | cDNA library | 17088214 | |
| TRPV1 |
|
SNAPIN | Yeast two-hybrid | Rat | 1-414 | Rat | Brain | cDNA library | 15066994 | |
| TRPV1 |
|
SNAPIN | Yeast two-hybrid | Rat | 1-432 | Human | Fetal brain | cDNA library | 17074976 | |
(
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
Screening
Validation: In vitro validation
Validation: In vivo validation
Characterization
Functional consequence
|
top
|
Validation: In vitro validation
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|---|---|---|---|---|---|---|---|---|---|---|
| Assay with recombinant proteins | Reference | |||||||||
| TRP channel construct | Interactor construct | |||||||||
| TRP channel | Interactor | Method | Species | Region | Expression system | Species | Region | Expression system | ||
| TRPM7 |
|
SNAPIN | Fusion protein-pull down assay | Human | 83-326 | In vitro translation | Human | Full-length | Not specified | 17088214 |
| TRPV1 |
|
SNAPIN | Fusion protein-pull down assay | Rat | 1-414 | E. coli | Human | Full-length | In vitro translation | 15066994 |
(
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
Screening
Validation: In vitro validation
Validation: In vivo validation
Characterization
Functional consequence
|
top
|
Validation: In vivo validation
|
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|---|---|---|---|---|---|---|---|---|---|---|
| Assay with endogenous proteins | Assay with overexpressed proteins | Reference | ||||||||
| Cell or tissue | Cell or tissue | TRP channel construct | Interactor construct | |||||||
| TRP channel | Interactor | Method | Species | Region | Species | Region | ||||
| TRPC6 |
|
SNAPIN | Co-immunoprecipitation | Rat brain cortex | 17684020 | |||||
| TRPM7 |
|
SNAPIN | Co-immunoprecipitation | Rat brain synaptic vesicle | 17088214 | |||||
| TRPV1 |
|
SNAPIN | Co-immunoprecipitation | HEK293 | Human | Full-length | Human | Full-length | 15066994 | |
(
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
Screening
Validation: In vitro validation
Validation: In vivo validation
Characterization
Functional consequence
|
top
|
Characterization
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|---|---|---|---|---|---|---|---|---|---|---|
| Binding region mapping | Stoichiometry | Affinity (Kd) | Reference | |||||||
| TRP channel | Interactor | |||||||||
| TRP channel | Interactor | Method | Species | Region | Species | Region | ||||
| TRPM7 |
|
SNAPIN | Fusion protein-pull down assay | Human | 87-326 | Human | 43-68 | 17088214 | ||
(
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)







Screening