SNAPIN / TRP channels
Name: SNARE-associated protein Snapin
(SNAPIN)
Official Symbol: SNAPIN
provided by HGNC
Function:
Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO), such as platelet dense granules and melanosomes. In concert with the AP-3 complex, the BLOC-1 complex is required to target membrane protein cargos into vesicles assembled at cell bodies for delivery into neurites and nerve terminals. The BLOC-1 complex, in association with SNARE proteins, is also proposed to be involved in neurite extension. Plays a role in intracellular vesicle trafficking. May modulate a step between vesicle priming, fusion and calcium-dependent neurotransmitter release through its ability to potentiate the interaction of synaptotagmin with the SNAREs and the plasma-membrane-associated protein SNAP25. Its phosphorylation state influences exocytotic protein interactions and may regulate synaptic vesicle exocytosis. May also have a role in the mechanisms of SNARE-mediated membrane fusion in non-neuronal cells.
Source: Reorganizing the protein space at the Universal Protein Resource (UniProt)
Nucleic Acids Res. 40: D71-D75 (2012).
Species | External DB | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Entrez Gene | UniprotKB | DIP | IntAct | MINT | BioGRID | STRING | IUPHAR-DB | KEGG | OMIM | |
Human
|
23557 | O95295 | DIP-31359N | O95295 | MINT-5002303 | 117101 | O95295 | hsa:23557 | 607007 | |
Mouse
|
20615 | Q9Z266 | DIP-44321N | Q9Z266 | MINT-3389684 | 203363 | Q9Z266 | mmu:20615 | ||
Rat
|
295217 | P60192 | DIP-37034N | P60192 | MINT-3389957 | 254916 | P60192 | rno:295217 |
Biological Process:
- GO:0008089 : anterograde axon cargo transport
- GO:0048490 : anterograde synaptic vesicle transport
- GO:0006886 : intracellular protein transport
- GO:0032438 : melanosome organization
- GO:0031175 : neuron projection development
- GO:0016079 : synaptic vesicle exocytosis
- GO:0031629 : synaptic vesicle fusion to presynaptic membrane
- GO:0016188 : synaptic vesicle maturation
- GO:0072553 : terminal button organization
- GO:0019048 : virus-host interaction
Source: The Gene Ontology Consortium. Gene ontology: tool for the unification of biology. Nat. Genet.. May 2000;25(1):25-9.
World Wide Web URL: http://www.geneontology.org/
World Wide Web URL: http://www.geneontology.org/
Disease:
No information in OMIM
Source: Online Mendelian Inheritance in Man, OMIM®. McKusick-Nathans Institute of Genetic Medicine,
Johns Hopkins University (Baltimore, MD), May, 2012.
World Wide Web URL: http://omim.org/
World Wide Web URL: http://omim.org/
Screening Validation: In vitro validation Validation: In vivo validation Characterization Functional consequence | top |
Screening | ||||||||||
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Experimental screening | Non-experimental screening | Reference | ||||||||
TRP channel construct | Interactor source | |||||||||
TRP channel | Interactor | Method | Species | Region | Species | Organ/tissue | Sample type | |||
TRPC6 | SNAPIN | Inference | Prediction | 17684020 | ||||||
TRPM7 | SNAPIN | Yeast two-hybrid | Human | 87-326 | Human | Brain | cDNA library | 17088214 | ||
TRPV1 | SNAPIN | Yeast two-hybrid | Rat | 1-414 | Rat | Brain | cDNA library | 15066994 | ||
TRPV1 | SNAPIN | Yeast two-hybrid | Rat | 1-432 | Human | Fetal brain | cDNA library | 17074976 |
(:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
Screening Validation: In vitro validation Validation: In vivo validation Characterization Functional consequence | top |
Validation: In vitro validation | ||||||||||
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Assay with recombinant proteins | Reference | |||||||||
TRP channel construct | Interactor construct | |||||||||
TRP channel | Interactor | Method | Species | Region | Expression system | Species | Region | Expression system | ||
TRPM7 | SNAPIN | Fusion protein-pull down assay | Human | 83-326 | In vitro translation | Human | Full-length | Not specified | 17088214 | |
TRPV1 | SNAPIN | Fusion protein-pull down assay | Rat | 1-414 | E. coli | Human | Full-length | In vitro translation | 15066994 |
(:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
Screening Validation: In vitro validation Validation: In vivo validation Characterization Functional consequence | top |
Validation: In vivo validation | ||||||||||
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Assay with endogenous proteins | Assay with overexpressed proteins | Reference | ||||||||
Cell or tissue | Cell or tissue | TRP channel construct | Interactor construct | |||||||
TRP channel | Interactor | Method | Species | Region | Species | Region | ||||
TRPC6 | SNAPIN | Co-immunoprecipitation | Rat brain cortex | 17684020 | ||||||
TRPM7 | SNAPIN | Co-immunoprecipitation | Rat brain synaptic vesicle | 17088214 | ||||||
TRPV1 | SNAPIN | Co-immunoprecipitation | HEK293 | Human | Full-length | Human | Full-length | 15066994 |
(:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)
Screening Validation: In vitro validation Validation: In vivo validation Characterization Functional consequence | top |
Characterization | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Binding region mapping | Stoichiometry | Affinity (Kd) | Reference | |||||||
TRP channel | Interactor | |||||||||
TRP channel | Interactor | Method | Species | Region | Species | Region | ||||
TRPM7 | SNAPIN | Fusion protein-pull down assay | Human | 87-326 | Human | 43-68 | 17088214 |
(:
click the arrow icon to show interactions only between the corresponding TRP channel and the interactor)